RetrogeneDB ID: | retro_cpor_635 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:32753704..32754485(-) | ||
Located in intron of: | ENSCPOG00000023184 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBFD1 | ||
Ensembl ID: | ENSCPOG00000006872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.52 % |
Parental protein coverage: | 71.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 7 |
Parental | GMEESGMDTEAET-VVTEAPARQLNCVEAEAAAGAAPEDYCDARDNLQPA-PAQPPGDSAAQASVSNGED |
GMEES..DTEAE..VV.EAPA..L.C.EAE.A..A..ED.......LQPA.PAQP.GDSAA.A.V.N.ED | |
Retrocopy | GMEESRTDTEAEM<VVSEAPAWLLSCIEAEVAVDATSEDSYNMLGSLQPA<PAQPAGDSAAWALVINCED |
Parental | AGG-GAGRELEL-VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREI |
.G..G.GRELEL.VDLK.IWNKTK..VKV.LDSTGSELK.KIHS.TG..PA..K.MYK.L.PED..LRE. | |
Retrocopy | VGM<GSGRELEL<VDLKSIWNKTKCNVKVLLDSTGSELK*KIHSFTGFLPAIKKTMYKRLLPEDTMLRER |
Parental | KVTSGAKIMVVGSTINDVLAVNTPKDASQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVK-GVQE |
KVTSGAKIMVVG..INDVLA..TPKDA.Q.DAKA.ENKKE.LCRQ.QHR.VLDKGK.EDV..SVK.GVQE | |
Retrocopy | KVTSGAKIMVVGAMINDVLAAYTPKDALQRDAKAGENKKELLCRQTQHRRVLDKGKLEDVTSSVK<GVQE |
Parental | RLPAVPLSGMYNKSGGKVRLTFK-LEQDQLWIGTK-ERTEKLPMGSIKNVVSEPIEGHED |
RLP...LSG.Y.KS.G..RL.FK.LEQDQLWIG.....T.KLPMGS.K.V..EP.EGH.. | |
Retrocopy | RLPGIALSGIYSKS-GEERLIFK>LEQDQLWIGAT<RWTDKLPMGSSKDVATEPMEGHKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 16 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .53 RPM |
SRP017611_liver | 0 .00 RPM | 17 .50 RPM |
SRP040447_lung | 0 .00 RPM | 17 .18 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 22 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000029331 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020614 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006872 | 2 retrocopies |
retro_cpor_292, retro_cpor_635 ,
|
Monodelphis domestica | ENSMODG00000006727 | 2 retrocopies |