Parental gene: | ENSCPOG00000010435 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_73:6635892..6669439(+) |
>ENSCPOG00000010435
ACATTCTCACCCGGGCCTAGCTCAGCAGCTCACGTAGAAGAACGGCAGAAGAAGCTGCAGGAATACCTAGCAGCCAAGGG
AAAACTGAAGAACCAAAACACCAAGCCTTATCTAAAAGCCAAGAATAATTGTCCAAATCCACCACCTTCTAAATCTACCA
TTAAACTCAAAAATGATGTTACCAACCGTGCTGTTTTGCCTGTCAAAACTACAAGGTCCATCAACATTAAACTCCAGTGC
AAACCAGCTACAGTACCAGGGTCCCAGAAGCCAAAGTTAGAGGGACCAAAACTTGTGGGCAAAAGTCTGACTTCAAGAGG
TGTTTCCTCTAACCCAACCTGTAAACCTTCCAGCAAGAGTCACCAGCAACATGAAGCTGGACCATCCACTACAGAAAATC
TGTCAAGCAAACCCATGAGGTCACCTAAGACACAGGGACCAAAATCTACAAAGCAGCGGGTTACAGCTCAAGCAAATGCA
AAATATACAGACACCCATGTGCAAAACAAATCTTTGGATGGCTTGCTCAAAGAGCTGAACAAGGAGAACTTGCTTCAAAC
CTTGTCAGAACCTGAGAAGAAGCCAGATCCTGCATTATGTACCATAAGTAAGCCAAAGACTAACTCTTATAATCAAACCA
AGAGCCATTTGACTACTAAACAGGTCTTGGGCAAAAGTGTGATGAGCAGTGCTGTTCTGAAAGACAGGGTTAATAAGCAG
TTTGTTAGAAAAACACAAACTAGGACTCTACCAGTAAAGTTACAGCAGCTCTCTAAAGGAGTAGAGCTTGCAAGACAAGA
AAAACCCTCAAGGACAATTCCCTCTCACTTCAGTCAGACCCTTCATAGGACCCAAGCATCAAAGAAGCCAGTGGTCAAGA
ACATAAAGGATGTGATGGTTAACAGGAGCAAATATGGACAACCAAAAGAAAGTCAGGTACAGTCACACACTGTTACTGAA
GAGAAAGTAAAACACACCAAACCCAGGACACACCTCAGTTCACTGCAGGGAGGACCTAACAACAGACATCCAAACAGCAA
GCAAGACCAGAAGTCCACACAACCTTGTTTTAGGTCCCAGACACATGAACTGCTAAAGTCAAAATCCGAAAACCAGAGGC
CTAATTTGAAAGCTGGCAACTTTCTTTCAGTCCTTCCAATGACTCCTAGCATAAGGACAAATGGAACCAACAGCTTTCAA
CAAAGAGCACAGACTGTGGACCCCAAGTTGAAAAAGACTTTTCCCCAGAAGCATTTCCTGAGCAAGACAGCTCCCAAAAC
TCAAGCTAGTGTCACAACCAGAAACGAAAGAGTCCCAGATGATACCCAAACTAATCCAACTGTTAAAAAAACAGCAGCAG
AGGATCGAAGGAAACAGCTAGAAGAATGGCAGAAATCTAAGGGGAAAATCTATAAACGGCCTCCCATGGAACTTAAAACA
AAAAGAAAAGTAATAGAGGAAATGAATATTTCATTCTGGAAGAATATTGAAGAAGAAGAGGAAGAAAAGAAAGCACAACT
GGAGCTGTCCAATAAGATTAACAGCACCCTGGCAGAATGTCTGAGGCTCACTGAAGAGGGTGTACTTTCTAATGAAATAT
CTACCATTTTGTCCAACATTCCTGAGGCTGAAAAATTCGCTAAATTCTGGATCTGCAAAGCAAAGCTATTGGCAAGAAAA
GGCACCTTTGATGTTATTGGGCTGTACGAAGAAGCCATTAAAAATGGAGCAAAACCAATTCAAGAGTTACGGGAAGTTGT
TCTTAATATTTTGCAAGATCAAAACAGAACTGCAGAAGACACAGGAGCTGCCCCTGATTCTTTAGGTTCTGCAAATATCA
GATTGATGGAAGAGCTGGTCAAGAAGACGGAATCTGAAGAGTCCTGTCTTCCTCCAGAAGAGCAGGACCAGGTTCCAGCA
ACTCCCCAGATAACCAAGGTGGGGCAGAATAATCATCCTGGTATCAAGTTACAGATCTCCTCCATCCCCAGAATAAGTGG
GATGCCAGAAGTGCAAGACATGAAGCTCATCACCCCTGTGCGGCGCTCAGCAAGGATCGAGCGAGCAGTGTCCCGCTACC
CAGAAATGCTGCAGGAACACGATCTGGTAGTGGCTTCTCTTGATGAACTCTTAAATGTGGAAGAAACGGAGTGCTTTATA
TTCCGTAAAAATGAAGCCTTGCCTGTAACATTAGGGTATGAAAATCCTGAATCATAA
ACATTCTCACCCGGGCCTAGCTCAGCAGCTCACGTAGAAGAACGGCAGAAGAAGCTGCAGGAATACCTAGCAGCCAAGGG
AAAACTGAAGAACCAAAACACCAAGCCTTATCTAAAAGCCAAGAATAATTGTCCAAATCCACCACCTTCTAAATCTACCA
TTAAACTCAAAAATGATGTTACCAACCGTGCTGTTTTGCCTGTCAAAACTACAAGGTCCATCAACATTAAACTCCAGTGC
AAACCAGCTACAGTACCAGGGTCCCAGAAGCCAAAGTTAGAGGGACCAAAACTTGTGGGCAAAAGTCTGACTTCAAGAGG
TGTTTCCTCTAACCCAACCTGTAAACCTTCCAGCAAGAGTCACCAGCAACATGAAGCTGGACCATCCACTACAGAAAATC
TGTCAAGCAAACCCATGAGGTCACCTAAGACACAGGGACCAAAATCTACAAAGCAGCGGGTTACAGCTCAAGCAAATGCA
AAATATACAGACACCCATGTGCAAAACAAATCTTTGGATGGCTTGCTCAAAGAGCTGAACAAGGAGAACTTGCTTCAAAC
CTTGTCAGAACCTGAGAAGAAGCCAGATCCTGCATTATGTACCATAAGTAAGCCAAAGACTAACTCTTATAATCAAACCA
AGAGCCATTTGACTACTAAACAGGTCTTGGGCAAAAGTGTGATGAGCAGTGCTGTTCTGAAAGACAGGGTTAATAAGCAG
TTTGTTAGAAAAACACAAACTAGGACTCTACCAGTAAAGTTACAGCAGCTCTCTAAAGGAGTAGAGCTTGCAAGACAAGA
AAAACCCTCAAGGACAATTCCCTCTCACTTCAGTCAGACCCTTCATAGGACCCAAGCATCAAAGAAGCCAGTGGTCAAGA
ACATAAAGGATGTGATGGTTAACAGGAGCAAATATGGACAACCAAAAGAAAGTCAGGTACAGTCACACACTGTTACTGAA
GAGAAAGTAAAACACACCAAACCCAGGACACACCTCAGTTCACTGCAGGGAGGACCTAACAACAGACATCCAAACAGCAA
GCAAGACCAGAAGTCCACACAACCTTGTTTTAGGTCCCAGACACATGAACTGCTAAAGTCAAAATCCGAAAACCAGAGGC
CTAATTTGAAAGCTGGCAACTTTCTTTCAGTCCTTCCAATGACTCCTAGCATAAGGACAAATGGAACCAACAGCTTTCAA
CAAAGAGCACAGACTGTGGACCCCAAGTTGAAAAAGACTTTTCCCCAGAAGCATTTCCTGAGCAAGACAGCTCCCAAAAC
TCAAGCTAGTGTCACAACCAGAAACGAAAGAGTCCCAGATGATACCCAAACTAATCCAACTGTTAAAAAAACAGCAGCAG
AGGATCGAAGGAAACAGCTAGAAGAATGGCAGAAATCTAAGGGGAAAATCTATAAACGGCCTCCCATGGAACTTAAAACA
AAAAGAAAAGTAATAGAGGAAATGAATATTTCATTCTGGAAGAATATTGAAGAAGAAGAGGAAGAAAAGAAAGCACAACT
GGAGCTGTCCAATAAGATTAACAGCACCCTGGCAGAATGTCTGAGGCTCACTGAAGAGGGTGTACTTTCTAATGAAATAT
CTACCATTTTGTCCAACATTCCTGAGGCTGAAAAATTCGCTAAATTCTGGATCTGCAAAGCAAAGCTATTGGCAAGAAAA
GGCACCTTTGATGTTATTGGGCTGTACGAAGAAGCCATTAAAAATGGAGCAAAACCAATTCAAGAGTTACGGGAAGTTGT
TCTTAATATTTTGCAAGATCAAAACAGAACTGCAGAAGACACAGGAGCTGCCCCTGATTCTTTAGGTTCTGCAAATATCA
GATTGATGGAAGAGCTGGTCAAGAAGACGGAATCTGAAGAGTCCTGTCTTCCTCCAGAAGAGCAGGACCAGGTTCCAGCA
ACTCCCCAGATAACCAAGGTGGGGCAGAATAATCATCCTGGTATCAAGTTACAGATCTCCTCCATCCCCAGAATAAGTGG
GATGCCAGAAGTGCAAGACATGAAGCTCATCACCCCTGTGCGGCGCTCAGCAAGGATCGAGCGAGCAGTGTCCCGCTACC
CAGAAATGCTGCAGGAACACGATCTGGTAGTGGCTTCTCTTGATGAACTCTTAAATGTGGAAGAAACGGAGTGCTTTATA
TTCCGTAAAAATGAAGCCTTGCCTGTAACATTAGGGTATGAAAATCCTGAATCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .70 RPM |
| SRP017611_kidney | 1 .36 RPM |
| SRP017611_brain | 0 .69 RPM |
| SRP040447_lung | 2 .77 RPM |
| SRP040447_skeletal_muscle | 0 .51 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000007242 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000012382 | within_species_paralog | 1 retrogene | |
| Felis catus | ENSFCAG00000028904 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000009729 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000012796 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000013625 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_229 | 65.71 | 50.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_528 | 82.09 | 57.99 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000010435 retrocopies