Parental gene:

CKAP2L, ENSCAFG00000007242

Aliases:None
Description:cytoskeleton associated protein 2-like [Source:HGNC Symbol;Acc:26877]
Organism:Dog (Canis familiaris)
Coordinates:17:36938301..36964593(-)


>ENSCAFG00000007242
CTACTAAGACCAGGCCTTGCCTATCTTGCAGAAGAGCGACAGAGAAAGCTCCAGGAGTACCTAGCAGCCAAAGGAAAACT
GAAGTGCCAAACCACCAAGCCTTATCTAAAAGCCAAGAGTAATCGTCTGAATCCTCCACCTTCTAAATCTAATATAATAC
CCAAAAAGGATGTTACCAATCATGTTGCTTTGCCTATCAAAGCTACAAGACCCATCAGCATTAAGCTCCAGCCCAGACCT
GGCAATCTTATGGGATCCCAGAAGCCAAAGTTGGAGCCACCAAAACTTCTGGGTAGAAGGCTGACTTCAGGATGTGTTTC
TTCTAACTCGAACTGTAAGCCTTCCAGCAAAGGCCAACAGCATAAAGCTGTATCATCCACTACTGAAGAATTATCTAGAA
AAACCATGGGATCACTTAATATGCAAGAATTGAAAACTGCAAAGCAGCAAGTAGCAGATCAAGGAAATACTAAATATGCA
GACTCTGTGAACAGTAACCATATTGAAAATGAACCCTTGGATAGCTTTCTAAAAGAGATGAACAAAGAGAACTTGCCCCA
AACTTTACCAGACTCTGAAACGAAGCCAAATCCTGAATTATGGGCCATAGGTAAGCCAAAGACTAACTCTTATAATCAAG
TCAAGAGCAGTTTGGCTCCTAAACAAGCCTTGGGCAAAGGTTCAGGAAATAGTGCTGTTCTGAAAGACAGAGTTAATAAA
CAGTTTGTTGGAAAAACACAAATTAGGACACCACCAGTAAAGTCACAGCAACTCTCAAGAGGAACAAATCTTGCAAGACC
AGGAGAAAAACTCCCAAAGACAGTTCCGTCTCACAATGTTCAGACCCTTGGTAGGACTCAGGCATCAAAAAAAACAGTGG
TCAAGGACATAAAGGATATAAAGGTTAATAGAGATAACTCTGAAAGACCAAATGAAAGTAAGGTACAGTCACACACTGTT
ACTGAACAGAAAGTAAAACAAACCAAACCCTGGACATGCCCCAGTGTGCTTCGGGGAGGCTTTAACAACAGACATCCAAA
CATTAAGCAAGATCAGAAATCCACTCAACCTTGTTCCAAAACTCAGACGTCATGTGCACCACAAAAATCAAAACGCACAA
GCCAAAGGCCTAATTTGGCAGTTGGCAGTTTTAATTCAGTCATTCCAAGCACCCCTGTCATAACAGCAAATGGAACCAGT
GGTAATAAATGCCGCAACAGCTATGAACAAAAAGCACAGACTTTGGACTCCAAGTTGAAAAAGACTCTTCCCCAGAACCA
CTTTCTTAATAAGACAGCTCCCAAAACTCAAGCTGGTAACAAAACTATAAATGGAGGAAGAGTCCCAAATGGGACCCAGA
CCAATCCAAATATTAAGAAGATCACAGCAGAGGATCGAAGGAAACAACTGGAAGAATGGCAGAAGTCTAAGGGGAAAATC
TATAAACGGCCTCCTATGGAACTTAAAACAAAAAGAAAAGTAATAGAGGAAATGAATATTTCATTCTGGAAGAGTATGGA
AAAAGAAGATGAAGAAAAGAAAGCACAACTTGAACTGTCCAATAAAATTAACAGCACCCTAACACAATGTCTGCAGCTCA
TTGAGGAGGGTGTACCTTCTAATGCAATATTAACCATATTGTCCAGTATTCCTGAGATTGAAAAATTTTCTAAATTCTGG
ATCCTTAAAGCAAAGTTGTTGGCAAGTAAAGGTACCTTTGATGTTATTGGGCTGTATGAAGAGGCCATTAGAAATGGGGC
AACACCAATACAAGAGTTACGGGAAGTCGTTCTTAAAATTTTGCAAGACCCAAACAGAACCACAGAAGGAGTTACCTCTG
ACTCTATAGTTACTGACACAAATATAACATCAACAGAAGAACTGGCCAATAAGACAGAATCTGAAATGTCTTGTCTTTCT
CTGAACGAGAGAGAACAGGTTACAGCAACACCCCAAATAACCAAGGCAGAACAGGATAATCATCCTAGTATCAAACTACA
GATCGCCCCAATCCCTAGAATAAGTGGAATGCCAGACGTGCAAGACATGAAGCTCATCACCCCTGTACGGCGTTCGGCAA
GGATTGAGCGAGCCATGTCCCGCTACCCAGAAATGTTGCAGGAACATGATATAGTCGTGGCTTCTCTTAATGAGCTGTTA
GAAGTGGAAGAAACAGAGTGTTTTATATTCCGTAAAAATGAGGCTTTGCCAGTAACATTAGGGTTTAAAGTCCTCGAGTC
ATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 4 .16 RPM
SRP017611_brain 0 .32 RPM
SRP017611_kidney 0 .40 RPM
SRP017611_liver 0 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005898 within_species_paralog 1 retrogene
retro_cfam_968,
Cavia porcellus ENSCPOG00000010435 ortholog_one2many 2 retrogenes
retro_cpor_229, retro_cpor_528,
Felis catus ENSFCAG00000028904 ortholog_one2one 1 retrogene
retro_fcat_615,
Mustela putorius furo ENSMPUG00000009729 possible_ortholog 1 retrogene
retro_mputfur_1172,
Ochotona princeps ENSOPRG00000012796 ortholog_one2one 1 retrogene
retro_opri_904,
Tupaia belangeri ENSTBEG00000013625 ortholog_one2one 2 retrogenes
retro_tbel_1637, retro_tbel_4436,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_858 63.12 53.01
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Download FASTA sequences of all ENSCAFG00000007242 retrocopies