Parental gene: | RAB5C, ENSCPOG00000011190 |
| Aliases: | None |
| Description: | RAB5C, member RAS oncogene family [Source:HGNC Symbol;Acc:9785] |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_53:12074467..12076473(-) |
>ENSCPOG00000011190
ATGGCGGGTCGGGGAGGCGCAGCTCGCCCCAACGGACCAGCCTCGGGGAACAAGATCTGCCAGTTCAAGCTGGTCCTGCT
GGGGGAGTCGGCAGTGGGCAAGTCCAGCCTCGTGCTCCGCTTTGTCAAGGGCCAGTTCCACGAGTACCAGGAGAGCACCA
TTGGAGCGGCCTTCCTCACACAGACGGTCTGCCTGGACGACACAACGGTCAAGTTTGAGATCTGGGACACAGCTGGCCAG
GAGCGGTACCACAGCCTGGCGCCCATGTACTACCGCGGCGCACAGGCAGCCATCGTGGTCTACGACATCACCAACACGGA
CACTTTCTTGCGGGCCAAGAACTGGGTGAAGGAGCTGCAGCGGCAGGCCAGCCCCAACATCGTCATAGCGCTGGCGGGGA
ACAAGGCCGACCTGGCCAGCAAGCGGGCCGTGGAGTTCCAGGATGCCCAGGCCTACGCTGAGGACAACAGCCTGCTGTTC
ATGGAGACATCTGCCAAGACTGCCATGAACGTCAACGAGGTCTTCATGGCCATCGCCAAGAAGCTGCCCAAGAATGAGCC
CCAGAACGTAGCAGGTGCGCCAGGCCGGAACCGAGGTGTTGACCTGCAGGAGAGCAGCCCAGCCAGCCGGGGCCAGTGCT
GCAGCAACTGA
ATGGCGGGTCGGGGAGGCGCAGCTCGCCCCAACGGACCAGCCTCGGGGAACAAGATCTGCCAGTTCAAGCTGGTCCTGCT
GGGGGAGTCGGCAGTGGGCAAGTCCAGCCTCGTGCTCCGCTTTGTCAAGGGCCAGTTCCACGAGTACCAGGAGAGCACCA
TTGGAGCGGCCTTCCTCACACAGACGGTCTGCCTGGACGACACAACGGTCAAGTTTGAGATCTGGGACACAGCTGGCCAG
GAGCGGTACCACAGCCTGGCGCCCATGTACTACCGCGGCGCACAGGCAGCCATCGTGGTCTACGACATCACCAACACGGA
CACTTTCTTGCGGGCCAAGAACTGGGTGAAGGAGCTGCAGCGGCAGGCCAGCCCCAACATCGTCATAGCGCTGGCGGGGA
ACAAGGCCGACCTGGCCAGCAAGCGGGCCGTGGAGTTCCAGGATGCCCAGGCCTACGCTGAGGACAACAGCCTGCTGTTC
ATGGAGACATCTGCCAAGACTGCCATGAACGTCAACGAGGTCTTCATGGCCATCGCCAAGAAGCTGCCCAAGAATGAGCC
CCAGAACGTAGCAGGTGCGCCAGGCCGGAACCGAGGTGTTGACCTGCAGGAGAGCAGCCCAGCCAGCCGGGGCCAGTGCT
GCAGCAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 44 .62 RPM |
| SRP017611_kidney | 87 .62 RPM |
| SRP017611_brain | 44 .17 RPM |
| SRP040447_lung | 139 .67 RPM |
| SRP040447_skeletal_muscle | 23 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000000472 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000005322 | within_species_paralog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000005614 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000014792 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008398 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018568 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_333 | 57.99 | 77.31 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_473 | 61.64 | 73.15 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000011190 retrocopies