RetrogeneDB ID: | retro_cpor_219 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_10:20349321..20349787(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB5A | ||
Ensembl ID: | ENSCPOG00000005322 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.84 % |
Parental protein coverage: | 73.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FSTQTV-CLDDTTVKFEIWDTAGQERY-HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP |
FSTQT..CLDDTTVK..I.D.A.QE.Y..SLAPMYYR....AI.V..ITN.ESF.RAKN...E.QRQASP | |
Retrocopy | FSTQTS<CLDDTTVKSKIRDMAHQESY<PSLAPMYYRKVHTAIIVCAITNKESFLRAKNSGEEHQRQASP |
Parental | NIVIALSGNKADLANKRAVDFQEAQSYAEDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSA |
N.VI.L.GNKADLAN.R...F...QSYA.D.SLLF..TSA...M.VNEI.....K...KNEPQNPG.NSA | |
Retrocopy | NTVITLLGNKADLANTR---F*DTQSYADDYSLLFTKTSA*KAMHVNEISRQ*LKSCQKNEPQNPGTNSA |
Parental | RGRGVDLTEPTQPTRSQCCSN |
R.RGV.LTE.TQPT.S.CCSN | |
Retrocopy | RARGVNLTETTQPTKSHCCSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .46 RPM |
SRP017611_liver | 0 .00 RPM | 23 .11 RPM |
SRP040447_lung | 0 .00 RPM | 21 .14 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 8 .69 RPM |