Parental gene: | ENSCPOG00000011784 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_3:16681744..16688563(-) |
>ENSCPOG00000011784
CATTTACAGCAAAAGGATCTCAGAGTGAAGAACGTAAAGAAATTCAGATATATGAAGTTGATTTCCATGGAAACATCGTC
ATCCTCTGATGACAGTTGTGACAGCTTTGCTTCTGATAATTTTGCAAACACAAGACTGCAGGCAGCCCGAGAGGGCTGCA
GGACCCGCAGCCAGGGTAGACTCTCTGGCCCTCTCAGGGTGGCCATGAAGTTTCCAGTGCGAGTGCATAGCACCAGGGCG
ACAACCAACAAAAAGCCAGCACCCCCCAAACCTCCAGAGAATTCTGACATCATTTCCATCTCCGATTCAGAAGACGAAAG
TGGCGTGAACTTTCTGGAAAAAAGGGCCTTAAATATAAAGCAAAACAAAGCCATGCTTGCAAAACTCATGTCAGAATTAG
AAAGTTTTCCTGGCTCATTCTCTGGAAGACCATCTGTCCCGGGCCCCAGATCACTGTCGAAGACTCCCAGGAGGCGCACA
TTCCCACGAATGGCTGCCAGGAGGAACCCAGAGCGCAGAGCTCGGCCGCTTACCAGGTCCAGGTCTCGGATCCTGGGGTC
TCTGAGTGCTCTCCCCACTGAGGAGGAGGAAGAAGAGGAAGACGATAAGTACATGCTCGTGAGGAAAAGGAAGGCCTTGG
ATGCATTGTATTCACAGGACGATGACATGCCCAGAAGTCGCCGCCCGGGATCCATGACCCTTCCACATATAATTCGTCCA
GTAGAAGAAATCACAGAGGACGAGTTGGAGAACATCTGCAGCAACTCCCGAGAGAAGATCTATAACCGCTCGCTGGGTTC
TACTTGCCATCAGTGCCGTCAGAAAACTATTGATACCAAAACAAACTGCAGGAACCCAGACTGCTGGGGCATTCGTGGCC
AGTTCTGTGGCCCTTGCCTTCGGAATCGCTATGGGGAGGAGGTCAGGGATGCACTGCTGGACCCGGACTGGCACTGCCCA
CCTTGTCGGGGGATCTGTAACTGCAGTTTCTGTCGCCAGCGAGATGGACGGTGTGCAACTGGGGTCCTTGTGTATTTAGC
CAAATACCATGGCTTTGGGAATGTGCATGCTTACTTGAAGAGCCCCCACAGTCTGAAACAGGAGTTTGAAATGCAAGTA
CATTTACAGCAAAAGGATCTCAGAGTGAAGAACGTAAAGAAATTCAGATATATGAAGTTGATTTCCATGGAAACATCGTC
ATCCTCTGATGACAGTTGTGACAGCTTTGCTTCTGATAATTTTGCAAACACAAGACTGCAGGCAGCCCGAGAGGGCTGCA
GGACCCGCAGCCAGGGTAGACTCTCTGGCCCTCTCAGGGTGGCCATGAAGTTTCCAGTGCGAGTGCATAGCACCAGGGCG
ACAACCAACAAAAAGCCAGCACCCCCCAAACCTCCAGAGAATTCTGACATCATTTCCATCTCCGATTCAGAAGACGAAAG
TGGCGTGAACTTTCTGGAAAAAAGGGCCTTAAATATAAAGCAAAACAAAGCCATGCTTGCAAAACTCATGTCAGAATTAG
AAAGTTTTCCTGGCTCATTCTCTGGAAGACCATCTGTCCCGGGCCCCAGATCACTGTCGAAGACTCCCAGGAGGCGCACA
TTCCCACGAATGGCTGCCAGGAGGAACCCAGAGCGCAGAGCTCGGCCGCTTACCAGGTCCAGGTCTCGGATCCTGGGGTC
TCTGAGTGCTCTCCCCACTGAGGAGGAGGAAGAAGAGGAAGACGATAAGTACATGCTCGTGAGGAAAAGGAAGGCCTTGG
ATGCATTGTATTCACAGGACGATGACATGCCCAGAAGTCGCCGCCCGGGATCCATGACCCTTCCACATATAATTCGTCCA
GTAGAAGAAATCACAGAGGACGAGTTGGAGAACATCTGCAGCAACTCCCGAGAGAAGATCTATAACCGCTCGCTGGGTTC
TACTTGCCATCAGTGCCGTCAGAAAACTATTGATACCAAAACAAACTGCAGGAACCCAGACTGCTGGGGCATTCGTGGCC
AGTTCTGTGGCCCTTGCCTTCGGAATCGCTATGGGGAGGAGGTCAGGGATGCACTGCTGGACCCGGACTGGCACTGCCCA
CCTTGTCGGGGGATCTGTAACTGCAGTTTCTGTCGCCAGCGAGATGGACGGTGTGCAACTGGGGTCCTTGTGTATTTAGC
CAAATACCATGGCTTTGGGAATGTGCATGCTTACTTGAAGAGCCCCCACAGTCTGAAACAGGAGTTTGAAATGCAAGTA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 12 .14 RPM |
| SRP017611_kidney | 4 .92 RPM |
| SRP017611_brain | 0 .92 RPM |
| SRP040447_lung | 2 .14 RPM |
| SRP040447_skeletal_muscle | 0 .64 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007809 | ortholog_many2many | 1 retrogene | |
| Homo sapiens | ENSG00000144354 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000055612 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005787 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012645 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009026 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_661 | 74.21 | 90.88 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_691 | 83.67 | 79.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000011784 retrocopies