RetrogeneDB ID: | retro_cpor_661 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_212:496051..497047(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011784 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.21 % |
Parental protein coverage: | 90.88 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 7 |
Parental | SFASDNFAN-TRLQAAREGCRTRSQGRLSGPLRVA-MKFPVRVHSTRATTNKKPA-PPKPPENSDIISIS |
SFASDNF...TR......GCRTRSQGR.S.PLRVA.M.FPV.V.S.RAT..KKP...P.PPENS..IS.S | |
Retrocopy | SFASDNFCK<TRDHRQPKGCRTRSQGRSSSPLRVA<MNFPVPVRSIRATPEKKPG>TPQPPENSATISNS |
Parental | DSEDESGVNFLEKRALNIKQNKAMLAKLMSELESFPGSFSGRPSVPGPRSL-SKTPRRRTFPRMAARRNP |
DSEDESG.NFL.K.ALNIK..KAMLAKLMSEL.SF.GSFSGRPSV.GPRS..S..P.RRTFP..A.RRNP | |
Retrocopy | DSEDESGMNFLKKWALNIK*SKAMLAKLMSELGSFLGSFSGRPSVLGPRSVRSQAPLRRTFPGAASRRNP |
Parental | ERRA-RPLTRSRSRILGSLSALPTEEE--EEE-EDDKYMLVRKRKALDALYSQDDDMPRSRRPGSMTLPH |
ERR..R.LTRSRSRILGS.SALP.EEE..EE..ED.KYMLVRKRKALDAL...DDDMP..RR.GS.TLPH | |
Retrocopy | ERRT<RLLTRSRSRILGSPSALPAEEEEEEED>EDHKYMLVRKRKALDAL---DDDMP-GRRLGSTTLPH |
Parental | IIRPVEEIT-EDELENICSNSREKIYNRSLGSTCHQCRQKTIDTKTNCRNPDCWGIRGQF-CGPCLRNRY |
.IRPVEEIT...ELENICSNSREKI..RS.GSTC.QC.QKTI.TKTNCR.PD.WGI.GQF...PCL.NRY | |
Retrocopy | VIRPVEEIT<SNELENICSNSREKI*DRSPGSTCRQCGQKTINTKTNCRHPDSWGIPGQF<LLPCLQNRY |
Parental | GEEVRDALLDPDWHCPPCRGICNCSFCRQRDGRCATGVLVYLAKYHGFGNVHAYLKSPHSLKQEFEMQV |
GEE.RDALLD.D..CPPCRGICNCSFC.Q.DG.CA.GVL.YLA..HGFG.VHAYLKS...LKQEFEMQV | |
Retrocopy | GEEIRDALLDRD--CPPCRGICNCSFCCQ*DG*CAVGVLEYLAEFHGFGDVHAYLKS---LKQEFEMQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .92 RPM |
SRP017611_liver | 0 .00 RPM | 12 .14 RPM |
SRP040447_lung | 0 .00 RPM | 2 .14 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007809 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011784 | 2 retrocopies |
retro_cpor_661 , retro_cpor_691,
|
Homo sapiens | ENSG00000144354 | 1 retrocopy | |
Mus musculus | ENSMUSG00000055612 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005787 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012645 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009026 | 1 retrocopy |