Parental gene:

NACA2, ENSCPOG00000012654

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:41525579..41538399(+)


>ENSCPOG00000012654
ATGCCCGGTGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCACAGCCCCAGGCTGAGACAGGGTCTGGAAC
AGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAGGAGCAAGATTCCACACAAGCATCCACACAACAAGCCCAGCTGG
CAGCAGCAGCTGAAATCGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGCTATG
TCCAAACTGGGTCTTCGGCAGGTTACAGGGGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCAC
AAAACCAGATGTCTATAAGAGCCCAGCTTCAGATACCTACATAGTTTTTGGGGAAGCCAAGATTGAAGACTTATCTCAGC
AAGCACAGTTAGCGGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAATACACAGACTCCA
ACTGTTCAAGAGGAGAGTGAAGAGGAAGAGGTTGATGAAACAGGTGTGGAAGTTAAGGACATAGAATTGGTTATGTCACA
AGCAAATGTATCAAGGGCAAAGGCGGTCCGAGCTCTGAAGAACAACAGTAATGATATTGTAAATGCTATTATG

Library Parental gene expression (RPM)
SRP017611_liver 158 .35 RPM
SRP017611_kidney 233 .35 RPM
SRP017611_brain 117 .97 RPM
SRP040447_lung 179 .93 RPM
SRP040447_skeletal_muscle 97 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004175 possible_ortholog 3 retrogenes
retro_amel_1725, retro_amel_1821, retro_amel_643,
Canis familiaris ENSCAFG00000000141 possible_ortholog 8 retrogenes
retro_cfam_1502, retro_cfam_1561, retro_cfam_1884, retro_cfam_1913, retro_cfam_2096, retro_cfam_2169, retro_cfam_710, retro_cfam_974,
Callithrix jacchus ENSCJAG00000010701 ortholog_one2one 8 retrogenes
retro_cjac_1063, retro_cjac_1452, retro_cjac_1875, retro_cjac_2202, retro_cjac_2453, retro_cjac_2696, retro_cjac_2975, retro_cjac_3232,
Loxodonta africana ENSLAFG00000004598 possible_ortholog 6 retrogenes
retro_lafr_1107, retro_lafr_113, retro_lafr_1251, retro_lafr_166, retro_lafr_491, retro_lafr_958,
Myotis lucifugus ENSMLUG00000001169 possible_ortholog 16 retrogenes
retro_mluc_1147, retro_mluc_1653, retro_mluc_1668, retro_mluc_1756, retro_mluc_1767, retro_mluc_1851, retro_mluc_1881, retro_mluc_1941, retro_mluc_2587, retro_mluc_2600, retro_mluc_414, retro_mluc_492, retro_mluc_526, retro_mluc_641, retro_mluc_725, retro_mluc_861,
Pteropus vampyrus ENSPVAG00000008015 ortholog_one2one 8 retrogenes
retro_pvam_1007, retro_pvam_1097, retro_pvam_1154, retro_pvam_1173, retro_pvam_1382, retro_pvam_1384, retro_pvam_290, retro_pvam_580,
Vicugna pacos ENSVPAG00000004028 possible_ortholog 2 retrogenes
retro_vpac_485, retro_vpac_611,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_617 79.68 88.63
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2. retro_cpor_1025 67.36 67.30
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3. retro_cpor_1365 52.34 59.72
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Download FASTA sequences of all ENSCPOG00000012654 retrocopies