RetrogeneDB ID: | retro_cpor_1365 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_72:3530353..3530707(+) | ||
Located in intron of: | ENSCPOG00000013524 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA2 | ||
Ensembl ID: | ENSCPOG00000012654 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.34 % |
Parental protein coverage: | 59.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDL |
E..S....S.S.K.A.K..SKL....VT..TR.TI.K.K.......KPDVYKSPASD.YI...EAK.E.L | |
Retrocopy | EEQSVKQNSPSNKQAQKVGSKLDHWKVTAITRITIQKPK----AVPKPDVYKSPASDAYIILKEAKTEGL |
Parental | SQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQE-ESEEEEVDETGVEVK-DIELVMSQ |
SQQAQLAA..K..VQGEAVS......Q.PTVQE.E.E.......GV....DIEL..S. | |
Retrocopy | SQQAQLAATAKSRVQGEAVSDFKK-IQIPTVQE>EKEVDKI---GVRLR<DIELFTSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 117 .97 RPM |
SRP017611_kidney | 0 .10 RPM | 233 .35 RPM |
SRP017611_liver | 0 .04 RPM | 158 .35 RPM |
SRP040447_lung | 0 .03 RPM | 179 .93 RPM |
SRP040447_skeletal_muscle | 0 .04 RPM | 97 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000012654 | 3 retrocopies |
retro_cpor_1025, retro_cpor_1365 , retro_cpor_617,
|
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Pteropus vampyrus | ENSPVAG00000008015 | 8 retrocopies | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |