Parental gene: | C11ORF54, ENSCPOG00000014146 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_40:1182718..1195243(-) |
>ENSCPOG00000014146
ATGGCTTGTGCTGAGTTTTCTTTTCATGTGCCAAGTCTGTCAGAGCTTGCTGAAGTTATGCAGAAGGGGCTAAAAGATAA
TTTTGCTGAAGTCCAGGTTTCTGTAGTTGATTGTCCTGATTTGACTAAGGAACCATTCACCTTTCCTGTAAAAGGCATCT
GTGGGAAAACTAGAATTGCAGAAGTGGGAGGTGTGCCTTACTTAATGCCTCTTGTAAACAAAAAAAAAGTTTATGATCTG
AATAAGATTGCAAAAGAAATCAAGTTGCCTGGAGCTTTTATGCTTGGAGCAGGGGCAGGCCCATTTCAGACTCTTGGGTT
CAATTCTGAGTTTATGCCAATTGTTCAAACAGAAAGTGAACACAATCCTCCTGTGAATGGAAGTTACTTTTCCTACATTA
ACCCTGCAGATGGAGGGTACCTACTAGAGAAATACAACAAGAAATACCACGATTTTGGATGTGCATTAATGGCTAATCTT
TTTGCCAGTGAGGGTCAACCTGGGAAGGTAATTGAGGTAAAAGCCAAAAGAAGAACTGGACAACTTAACTTTGTGACTTC
TATGAGACAGACTCTGGGAAACCATTATGGAAACAAGCCTGTAGGGATGGGAGGTACTTTCATAGTTCAGAAGGGAAAAG
TAAAGGCTCATATTATGCCCACAGAATTTTCTTCTTGTCCATTGAACTCTGATGAAGAAATAAATAAATGGCTGAATTTT
TATGAGATGAAGGCTCCTTTGGTTTGTCTACCAGTTTTTGTCTCCAAAGACCCAGGGTTTGACTTGCGACTGGAACACAC
TCACTTTTTTAGTCATCATGGAGAAGGTGGACACTACCATTATGACACTACTCCAGATACAGTGGAATATCTTGGATATT
TTTCACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAGACCCATGGCTTTGGGAGAGAT
ATGGCTTGTGCTGAGTTTTCTTTTCATGTGCCAAGTCTGTCAGAGCTTGCTGAAGTTATGCAGAAGGGGCTAAAAGATAA
TTTTGCTGAAGTCCAGGTTTCTGTAGTTGATTGTCCTGATTTGACTAAGGAACCATTCACCTTTCCTGTAAAAGGCATCT
GTGGGAAAACTAGAATTGCAGAAGTGGGAGGTGTGCCTTACTTAATGCCTCTTGTAAACAAAAAAAAAGTTTATGATCTG
AATAAGATTGCAAAAGAAATCAAGTTGCCTGGAGCTTTTATGCTTGGAGCAGGGGCAGGCCCATTTCAGACTCTTGGGTT
CAATTCTGAGTTTATGCCAATTGTTCAAACAGAAAGTGAACACAATCCTCCTGTGAATGGAAGTTACTTTTCCTACATTA
ACCCTGCAGATGGAGGGTACCTACTAGAGAAATACAACAAGAAATACCACGATTTTGGATGTGCATTAATGGCTAATCTT
TTTGCCAGTGAGGGTCAACCTGGGAAGGTAATTGAGGTAAAAGCCAAAAGAAGAACTGGACAACTTAACTTTGTGACTTC
TATGAGACAGACTCTGGGAAACCATTATGGAAACAAGCCTGTAGGGATGGGAGGTACTTTCATAGTTCAGAAGGGAAAAG
TAAAGGCTCATATTATGCCCACAGAATTTTCTTCTTGTCCATTGAACTCTGATGAAGAAATAAATAAATGGCTGAATTTT
TATGAGATGAAGGCTCCTTTGGTTTGTCTACCAGTTTTTGTCTCCAAAGACCCAGGGTTTGACTTGCGACTGGAACACAC
TCACTTTTTTAGTCATCATGGAGAAGGTGGACACTACCATTATGACACTACTCCAGATACAGTGGAATATCTTGGATATT
TTTCACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAGACCCATGGCTTTGGGAGAGAT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 272 .61 RPM |
| SRP017611_kidney | 203 .83 RPM |
| SRP017611_brain | 13 .46 RPM |
| SRP040447_lung | 10 .24 RPM |
| SRP040447_skeletal_muscle | 5 .93 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013446 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000000412 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002523 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000007819 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000001140 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_1286 | 77.35 | 57.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000014146 retrocopies