RetrogeneDB ID: | retro_cpor_1286 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_65:2335420..2335943(+) | ||
Located in intron of: | ENSCPOG00000009391 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C11ORF54 | ||
Ensembl ID: | ENSCPOG00000014146 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.35 % |
Parental protein coverage: | 57.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PADGGYLLEKYNKKYHDFGCALMANLFASEGQPGKVIEVKAKRRTGQLNFVTSMRQTLGNHYGNKPVGMG |
PAD.G.LLEK.N......GCALM.NLFAS.GQPGKV.EVKAK.RTGQLNFVTSMRQTLGNHYGNKPVGMG | |
Retrocopy | PADEGDLLEKHNNS----GCALMTNLFASAGQPGKVTEVKAKIRTGQLNFVTSMRQTLGNHYGNKPVGMG |
Parental | GTFIVQKGKVKAHIMPTEFSSCPLNSDEEINKWLNFYEMKAPLVCLPVFVSKDPGFDLRLEHTHFFSHHG |
.TF.V.KGK.KAHI....FS.C..NSDEEINKWL.FYEMKA.LV.LPVFVSKDPGFDL.L.H...FSHHG | |
Retrocopy | DTFTVEKGKLKAHITHIKFSPCLMNSDEEINKWLHFYEMKASLVSLPVFVSKDPGFDL*LTHS-LFSHHG |
Parental | EGGHYHYDTTPDTVEYL-GYFSPAEFLYRIDQPKETHGFGR |
EGGHYH.DT.PDTVEYL.G.F....FLYR.DQPKETHGFGR | |
Retrocopy | EGGHYH*DTSPDTVEYL>GTFH-LQFLYRTDQPKETHGFGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .46 RPM |
SRP017611_kidney | 0 .10 RPM | 203 .83 RPM |
SRP017611_liver | 0 .00 RPM | 272 .61 RPM |
SRP040447_lung | 0 .00 RPM | 10 .24 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 5 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013446 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014146 | 1 retrocopy |
retro_cpor_1286 ,
|
Monodelphis domestica | ENSMODG00000000412 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002523 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007819 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001140 | 3 retrocopies |