Parental gene: | PDZK1, ENSDNOG00000000375 |
| Aliases: | None |
| Description: | PDZ domain containing 1 [Source:HGNC Symbol;Acc:8821] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | scaffold_14886:1466..7044(-) |
>ENSDNOG00000000375
GCCTCCACATTCAAACCCCGCGCATGTAAGCTGTCCAAACAAGAAGGGCAGACTTATGCCTTCTTCCTGCGAATTGAGAA
GCACACTGCTGGCCACCTGGTCCGGATGGTTGAGAAGCGCAGCCCGGCCGAGAAGGCTGGCCTCCAGGATGGAGACAGAG
TTCTCAGCATCAATGCTGTCTTTGTGGACAACGAAGAGCATATGCAGGTTGTGGATCTGGTCAGAAAGAGTGGACATTCA
GTAACTTTTCTAGTTCTGGATGGGGATTCCTATGAGAAAGCCATTAAAAATCAGGTCGACTTGAAGGAGTTGGGTCAGAG
TCAGAAGGTACCAGGTTTGAGTGATGAGGAACTGCCCCCAGTGATGAATGGTGGAGTGGAGACTTGGACCCAGCCTCGGC
TGTGCTACCTGGTGAAAGAGGGGAACAGCTATGGCTTCTCTCTGAAAACTGTCCATGGTAAAAAGGGAGTGTACATGACT
GATATACTACCTCAAGGTGTGGCTATGAAAGCTGGTATCCTAGCTGATGATCACTTGATTGAAGTGAATGGAGAGAATGT
AGAAGATGCCAGTCACGAGGAAGTAGTTGAAAAGGTGAAGAAATCAGGAAGCCATGTCATGTTTCTGCTGGTGGATAAGG
AAACTGATAAGCACCACAGTGAGCAGAAGATAAAATTCAAGAGAGAAACAGCCAGTTTGAAACTGCTACCCCATAAGCCC
CGGGTTGTAGAGATCCAGAAAGGCAGCAATGGCTATGGGTTCTACCTAAGGGCAGGCCCAGACCAGAAA
GCCTCCACATTCAAACCCCGCGCATGTAAGCTGTCCAAACAAGAAGGGCAGACTTATGCCTTCTTCCTGCGAATTGAGAA
GCACACTGCTGGCCACCTGGTCCGGATGGTTGAGAAGCGCAGCCCGGCCGAGAAGGCTGGCCTCCAGGATGGAGACAGAG
TTCTCAGCATCAATGCTGTCTTTGTGGACAACGAAGAGCATATGCAGGTTGTGGATCTGGTCAGAAAGAGTGGACATTCA
GTAACTTTTCTAGTTCTGGATGGGGATTCCTATGAGAAAGCCATTAAAAATCAGGTCGACTTGAAGGAGTTGGGTCAGAG
TCAGAAGGTACCAGGTTTGAGTGATGAGGAACTGCCCCCAGTGATGAATGGTGGAGTGGAGACTTGGACCCAGCCTCGGC
TGTGCTACCTGGTGAAAGAGGGGAACAGCTATGGCTTCTCTCTGAAAACTGTCCATGGTAAAAAGGGAGTGTACATGACT
GATATACTACCTCAAGGTGTGGCTATGAAAGCTGGTATCCTAGCTGATGATCACTTGATTGAAGTGAATGGAGAGAATGT
AGAAGATGCCAGTCACGAGGAAGTAGTTGAAAAGGTGAAGAAATCAGGAAGCCATGTCATGTTTCTGCTGGTGGATAAGG
AAACTGATAAGCACCACAGTGAGCAGAAGATAAAATTCAAGAGAGAAACAGCCAGTTTGAAACTGCTACCCCATAAGCCC
CGGGTTGTAGAGATCCAGAAAGGCAGCAATGGCTATGGGTTCTACCTAAGGGCAGGCCCAGACCAGAAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 8 .36 RPM |
| SRP012922_cerebellum | 1 .65 RPM |
| SRP012922_heart | 0 .23 RPM |
| SRP012922_kidney | 282 .01 RPM |
| SRP012922_liver | 25 .85 RPM |
| SRP012922_lung | 1 .22 RPM |
| SRP012922_quadricep_muscle | 0 .17 RPM |
| SRP012922_spleen | 0 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000011153 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000028785 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000024935 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_1158 | 73.86 | 65.40 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_1857 | 78.79 | 87.45 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000000375 retrocopies