Parental gene:

PDZK1, ENSDNOG00000000375

Aliases:None
Description:PDZ domain containing 1 [Source:HGNC Symbol;Acc:8821]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_14886:1466..7044(-)


>ENSDNOG00000000375
GCCTCCACATTCAAACCCCGCGCATGTAAGCTGTCCAAACAAGAAGGGCAGACTTATGCCTTCTTCCTGCGAATTGAGAA
GCACACTGCTGGCCACCTGGTCCGGATGGTTGAGAAGCGCAGCCCGGCCGAGAAGGCTGGCCTCCAGGATGGAGACAGAG
TTCTCAGCATCAATGCTGTCTTTGTGGACAACGAAGAGCATATGCAGGTTGTGGATCTGGTCAGAAAGAGTGGACATTCA
GTAACTTTTCTAGTTCTGGATGGGGATTCCTATGAGAAAGCCATTAAAAATCAGGTCGACTTGAAGGAGTTGGGTCAGAG
TCAGAAGGTACCAGGTTTGAGTGATGAGGAACTGCCCCCAGTGATGAATGGTGGAGTGGAGACTTGGACCCAGCCTCGGC
TGTGCTACCTGGTGAAAGAGGGGAACAGCTATGGCTTCTCTCTGAAAACTGTCCATGGTAAAAAGGGAGTGTACATGACT
GATATACTACCTCAAGGTGTGGCTATGAAAGCTGGTATCCTAGCTGATGATCACTTGATTGAAGTGAATGGAGAGAATGT
AGAAGATGCCAGTCACGAGGAAGTAGTTGAAAAGGTGAAGAAATCAGGAAGCCATGTCATGTTTCTGCTGGTGGATAAGG
AAACTGATAAGCACCACAGTGAGCAGAAGATAAAATTCAAGAGAGAAACAGCCAGTTTGAAACTGCTACCCCATAAGCCC
CGGGTTGTAGAGATCCAGAAAGGCAGCAATGGCTATGGGTTCTACCTAAGGGCAGGCCCAGACCAGAAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 8 .36 RPM
SRP012922_cerebellum 1 .65 RPM
SRP012922_heart 0 .23 RPM
SRP012922_kidney 282 .01 RPM
SRP012922_liver 25 .85 RPM
SRP012922_lung 1 .22 RPM
SRP012922_quadricep_muscle 0 .17 RPM
SRP012922_spleen 0 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000011153 ortholog_one2many 1 retrogene
retro_cfam_298,
Myotis lucifugus ENSMLUG00000028785 ortholog_one2one 1 retrogene
retro_mluc_1116,
Oryctolagus cuniculus ENSOCUG00000024935 ortholog_one2many 1 retrogene
retro_ocun_133,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1158 73.86 65.40
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2. retro_dnov_1857 78.79 87.45
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Download FASTA sequences of all ENSDNOG00000000375 retrocopies