>retro_mluc_1116
ATGGCCTCCACCTTCAACCCCCGGGAGTGTAAGCTGTCTAAACAAGAAGGCCAGAGCTATGGCTTCTTCCTGCGGATTGA
GAAGGACACTGACGGCCACCTGGTGTGGGTGGTGGAGAAGGGCAGCCCTGCAGAGCGGGTGGGGCTCCAGGATGGAGACA
GAGTTCTCAGTATCAACGGCGTCTTTGTGGACAAGGAAGAACATAAACAGGTGGTGGATCTGGTCTGAAACAGCGGGAAT
TCAGTGACTTTTCTAGTTCTGGATGGGGATTCCTATGAGAAAGCCATGAGAGAAAAGGTAGACTTGAAAGAGTTGGGTCA
GAGTCAGAAGCGGCCAAGTCTGAATGATAAGAAACTGCCCTCTGTGATGAATGGAGGAGCCCAGGCGTGGACCCAGCTAC
GGCTCTGCTACCTGGTGAAGGAGGGGAGCAACTTTGGCTTTTCTCTGAAGACCGTCCAAGGTATAAAGGGGGTGTACATG
ACTGATATCACCCCGCAAGGTGTGGCTATGAAAGCAGGTGTCCTGGCGGATGATCACTTGATCGAGGTGAATGGAGAGAA
TGTAGAAGTTGCCACTCAGGAGGAAGTGGTTGAAAAGGTGAGGAAATCAGGAAGCCGTGTCACGTTCCTGCTGGTGGACA
AGGAAATGGACCAGCACCATAGAGAGCAGAATATCAAACTCAAGAGAGAAACAGCCAGTTTGAAATTACTGCCCCACCAG
CCCCAGGTGGTTGAGATGAAGAAGGGAAGCAATGGCTATGGTTTCTACCTGAGGGCAGGCCTGGAGCAGAGAGGTCAATT
CATCAAAGACATAGATTCTGGAAGTCCAGCAGAGGAGGCTGGCTTGAAGGCCAACGACCTGGTAATTGCTGTCAACGGCG
AGTCTGTGGAATCCCTCAATCATGACAGCGTGGTGGAGATGATCAGGAAGAGTGGAGATCAGACTTCACTGTTGGCAGTA
GACAAAGAGACGGACAGCATATACAGGCTGGCTCATTTTTCTCCATTTCTCTACTATCAAAGTCAACAACTGCCTAATGA
TTCTGTCAAGGAGGCCCTGGTTCCTGCGCCTGCGCCTCTGGCCAGCTCAAGTCCAGATCATAAGCCTAAGCTGTGCAGGC
TGGTTAAAGGTGACAATGGCTACGGCTTCCACTTAAATGCGATTCGGGGTCAGCCAGGCCCATTTGTCGAAGAGGTGCAG
GAGGGCAGCCCTGCCCAGCTGGCAGGGCTAGAGGATGAGGACGTCATCATTGAAGTGAATGGGGTGAATGTGCTGGACGA
ACCCTTTGAGAAGGTGGTAGACAGAATCCAGAGCAGTGGGAAGAATGTCACGCTCTTAGTCTGTGGAAAGAAGGCCTACG
ATTATTTCCAGGCAAAGAAAATCCCTATTGTTTCCTCCATGGCTGACCCACTGGATGTACCCCTTGATTCCAAAGAAGAA
ACATGGGTGGAGTCAGAGCTCGACTCACACATGGCAAAAGAACGAGCCCACAGTACAGCCTCGCAGTCTTCTTCCAATTC
TGAGGATACAAGGATA
ORF - retro_mluc_1116 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.95 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MASTFSPRECKLSKPEGQSYGFFLRIEKDTDGHLVRVVEKGSPAERAGLQDGDRVLRINGVFVDKEEHKQ |
| MASTF.PRECKLSK.EGQSYGFFLRIEKDTDGHLV.VVEKGSPAER.GLQDGDRVL.INGVFVDKEEHKQ |
Retrocopy | MASTFNPRECKLSKQEGQSYGFFLRIEKDTDGHLVWVVEKGSPAERVGLQDGDRVLSINGVFVDKEEHKQ |
|
Parental | VVDLIRNSGNSVTFLVLDGDSYEKAMREKVDLKELGQSQKGPSLNDKKLPPVMNGGAQAWTQPRLCYLVK |
| VVDL..NSGNSVTFLVLDGDSYEKAMREKVDLKELGQSQK.PSLNDKKLP.VMNGGAQAWTQ.RLCYLVK |
Retrocopy | VVDLV*NSGNSVTFLVLDGDSYEKAMREKVDLKELGQSQKRPSLNDKKLPSVMNGGAQAWTQLRLCYLVK |
|
Parental | EGGSFGFSLKTVQGIKGVYMTDITPQGVAMKAGVLADDHLIEVNGENVEDATHEEVVEKVRKSGSRVTFL |
| EG..FGFSLKTVQGIKGVYMTDITPQGVAMKAGVLADDHLIEVNGENVE.AT.EEVVEKVRKSGSRVTFL |
Retrocopy | EGSNFGFSLKTVQGIKGVYMTDITPQGVAMKAGVLADDHLIEVNGENVEVATQEEVVEKVRKSGSRVTFL |
|
Parental | LVDKETDQHHRELNIKLKRETASLKLLPHQPRVVEMKKGSNGYGFYLRAGPEQRGQFIKDIDSGSPAEEA |
| LVDKE.DQHHRE.NIKLKRETASLKLLPHQP.VVEMKKGSNGYGFYLRAG.EQRGQFIKDIDSGSPAEEA |
Retrocopy | LVDKEMDQHHREQNIKLKRETASLKLLPHQPQVVEMKKGSNGYGFYLRAGLEQRGQFIKDIDSGSPAEEA |
|
Parental | GLKANDLLIAVNGESVESLSHDSVVEMIRKSGDQTSLLVVDKETDSIYRLAHFSPFLYYQSQQLPNGSVK |
| GLKANDL.IAVNGESVESL.HDSVVEMIRKSGDQTSLL.VDKETDSIYRLAHFSPFLYYQSQQLPN.SVK |
Retrocopy | GLKANDLVIAVNGESVESLNHDSVVEMIRKSGDQTSLLAVDKETDSIYRLAHFSPFLYYQSQQLPNDSVK |
|
Parental | EALV--PAPLASSSPDHKPKLCRLVKGDNGYGFHLNAIRGQPGPFVKEVQEGSPAQLAGLEDEDVIIEVN |
| EALV..PAPLASSSPDHKPKLCRLVKGDNGYGFHLNAIRGQPGPFV.EVQEGSPAQLAGLEDEDVIIEVN |
Retrocopy | EALVPAPAPLASSSPDHKPKLCRLVKGDNGYGFHLNAIRGQPGPFVEEVQEGSPAQLAGLEDEDVIIEVN |
|
Parental | GVNVLDELYEKVIDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSMADPLDVPLVSKEETWVESELDSH |
| GVNVLDE..EKV.DRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSMADPLDVPL.SKEETWVESELDSH |
Retrocopy | GVNVLDEPFEKVVDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSMADPLDVPLDSKEETWVESELDSH |
|
Parental | VAKERAHSTASQSSSNSEDTRM |
| .AKERAHSTASQSSSNSEDTR. |
Retrocopy | MAKERAHSTASQSSSNSEDTRI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1116 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.