Parental gene: | PPP1CA, ENSDNOG00000007986 |
| Aliases: | None |
| Description: | protein phosphatase 1, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9281] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_6579:52889..73874(-) |
>ENSDNOG00000007986
ATGGCGGATATCGATAAACTCAACATCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTCCAGCTACAGGAGAATGAAATCAGAGGACTGTGCTTAAAGTCTCGTGAGATCTTTCTCAGTCAGCCTATCCTACTAG
AACTTGAAGCACCACTCAAAATATGTGGTGATATCCATGGGCAATACTATGATTTACTTCGACTTTTTGAGTATGGTGGT
TTCCCACCAGAAAGCAACTACTTGTTTCTCGGGGACTATGTGGACAGAGGGAAGCAGTCTTTGGAGACTATCTGCCTCTT
ATTGGCCTTCATCATATATCCCGAGAATTTTTTTCTTCCCCGAGGTTTTTTTGAATGTGCCAGCATCAATAGAATTTACG
GATTTTNNNNNNNNNGTAAAAGAAGATACAACATTAAACTATGGAAAACTTTCACAGACTGCTTTAACTGTTTACCGATA
GCAGCCATCGTGGATGAGAAAATATTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCGGCG
AATTATGCGACCAACTGATGTACCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGACCCCGATAAAGATGTCTTAG
GCTGGGGTGAAAATGACAGAGGAGTGTCCTTCACATTTGGTGCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGATTTG
GATCTTATATGTAGAGCCCATCAGGTGGTTGAAGATGGCTATGAGTTTTTTGCCAAGAGGCAGTTGGTCACTCTTTTTTC
TGCACCCAATTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGATGAAACGCTAATGTGTTCTTTTCAGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAATAGGCCTGAATCTG
TCCATTCAGAGAATTCCATATTATAAAAACAATACTCTTCTCGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 77 .40 RPM |
| SRP012922_cerebellum | 56 .91 RPM |
| SRP012922_heart | 15 .08 RPM |
| SRP012922_kidney | 20 .26 RPM |
| SRP012922_liver | 32 .20 RPM |
| SRP012922_lung | 39 .71 RPM |
| SRP012922_quadricep_muscle | 31 .67 RPM |
| SRP012922_spleen | 45 .78 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ciona intestinalis | ENSCING00000004542 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000000983 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005323 | ortholog_one2one | 1 retrogene | |
| Drosophila melanogaster | FBgn0003134 | ortholog_one2many | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_525 | 76.51 | 87.46 | Please wait, loading  |
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| 2. | retro_dnov_872 | 80.68 | 87.46 | Please wait, loading |
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| 3. | retro_dnov_2565 | 61.75 | 53.73 | Please wait, loading |
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Download FASTA sequences of all ENSDNOG00000007986 retrocopies