RetrogeneDB ID: | retro_dmel_21 | ||
Retrocopylocation | Organism: | Fruit fly (Drosophila melanogaster) | |
Coordinates: | 2L:3109719..3110730(+) | ||
Located in intron of: | FBgn0015600 | ||
Retrocopyinformation | Ensembl ID: | FBgn0005779 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pp1alpha-96A | ||
Ensembl ID: | FBgn0003134 | ||
Aliases: | None | ||
Description: | Protein phosphatase 1alpha at 96A [Source:FlyBase gene name;Acc:FBgn0003134] |
Percent Identity: | 59.93 % |
Parental protein coverage: | 92.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNIDSIISRLLEVRGARPGKNVQLSESEIRSLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLF |
.N.......L...R.........L.ESE...LC...RE.FL..P.LL...AP....GDIHGQ.YDLL... | |
Retrocopy | LNLNDLLNKLMSFRRSKM-QRLPLLESEVNLLCTLARELFLDEPMLLNVPAPIRVVGDIHGQFYDLLKIL |
Parental | EYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYAENFFLLRGNHECASINRIYGFYDECKRRYTI |
...G.PP...YLFLGDYVDRGK.S.ETI.LLLA...K......LLRGNHE..S.NR.YGF.DECKRRYT. | |
Retrocopy | DQCGYPPQTRYLFLGDYVDRGKNSVETITLLLALRVKFPKHIYLLRGNHESQSVNRVYGFFDECKRRYTV |
Parental | KLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLSSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGW |
KLWKTF.DC.NC.PVAAI....IFCCHGGLSP.L.....I..I.RPT.VP..GLLCDLLWSDPD....GW | |
Retrocopy | KLWKTFVDCYNCMPVAAIISHRIFCCHGGLSPQLKELSNIESIARPTEVPETGLLCDLLWSDPDRYGFGW |
Parental | GENDRGVSFTFGAEVVGKFLQKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVD |
...DRGVS...G..V..KFLQK..FDL.CRAHQVVEDGYEFFAKRQLVT.FSAPNYCG..DNAGA.M.VD | |
Retrocopy | TSSDRGVSYLYGRDVLEKFLQKNDFDLVCRAHQVVEDGYEFFAKRQLVTVFSAPNYCGLYDNAGASMGVD |
Parental | DTLMCSFQILKPADKRRFVYPN |
..L..SF.I....D.RR.V..N | |
Retrocopy | KDLVISFDIQR-GDIRRIVVRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BG634875 | 3109671 | 3110079 | 98.1 | 405 | 3 | 401 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013861 | 1 retrocopy | |
Bos taurus | ENSBTAG00000011198 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000004542 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000983 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009147 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007986 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000010484 | 2 retrocopies | |
Equus caballus | ENSECAG00000017228 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015721 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005323 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010661 | 2 retrocopies | |
Mus musculus | ENSMUSG00000004455 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009275 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005448 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000571 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013852 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008411 | 1 retrocopy | |
Drosophila melanogaster | FBgn0003134 | 5 retrocopies |