Parental gene: | IK, ENSDNOG00000009727 |
| Aliases: | None |
| Description: | IK cytokine, down-regulator of HLA II [Source:HGNC Symbol;Acc:5958] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_5659:6083..33302(+) |
>ENSDNOG00000009727
AGCAGAGCGGTCAGGGGCGAACCGTTCTCCAACCCTTTGGCCCCAGATGGCCATGATGTGGACGATCCTCATTCCTTCCA
CCAATCAAAACTCACAAATGAAGACTTCAGGAAGCTTCTCATGACCCCAAGGGCAGCACCCACCTCTGCACCACCGTCTA
AGTCACGTCACCATGAGATGCCAAGGGAGTACAATGAGGATGAAGACCCAGCTGCACGAAGAAGGAAAAAGAAAAGTTAT
TATGCCAAGCTACGCCAACAAGAAATTGAGAGAGAGCGGGAGCTAGCAGAGAAGTACCGGGACCGTGCCAAGGAACGGAG
AGATGGGGTGAACAAAGATTATGAGGAAACTGAGCTGATCAGCACCACAGCTAACTACAGAGCTGTGGGCCCCACTGCTG
AGGCGGACAAATCAGCTGCAGAGAAGAGAAGACAGTTGATCCAGGAGTCCAAATTCTTGGGTGGTGATATGGAACACACC
CATTTGGTGAAAGGCTTGGATTTTGCTCTGCTTCAGAAGGTACGAGCTGAGATTGCCAGCAAAGAAAAAGAGGAGGAAGA
ACTGATGGAAAAGCCCCAAAAGGAAACCAAGAAAGATGAAGATCCTGAGAATAAGATTGAATTTAAAACACGCCTGGGCC
GCAATGTTTATCGGATGCTCTTCAAGAGCAAAGCATATGAGAGGAATGAGCTGTTCCTGCCGGGTCGCATGGCCTATGTG
GTGGACTTGGATGATGAGTATGCCGACACGGACATCCCCACTACTCTTATTCGCAGCAAGGCTGATTGCCCCACCATGGA
GGCCCAGACTACACTGACCACAAATGATATTGTCATCAGTAAGCTCACCCAGATCCTTTCCTACCTGAGGCAGGGCACCC
GCAACAAGAAGCTCAAGAAGAAAGATAAAGGGAAGTTGGAAGAGAAGAAACCTCCTGAGGCCGACATGAACATTTTTGAA
GACATTGGCGATTATGTGCCCTCCACGACCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATGTTGACAAAGGACCTGGG
TCTGCCAAGGAGTTGATCAAGTCCATAAATGAGAAGTTTGCAGGGTCTGCTGGCTGGGAAGGCACTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAACAAGAAGGGCCCCTTAGGCCGCTGG
GACTTTGATACCCAGGAGGAATACAGCGAGTATATGAACAACAAGGAGGCTTTGCCTAAGGCTGCATTCCAGTATGGCAT
CAAAATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAAGAAACCAATGACAAGGCAGAACTTGATCGCCAATGGAAGAAGA
TTAGTGCAATCATTGAGAAAAGGAAGAAGATGGAAGCTGATGGGGTTGAAGTCAAAAGACCAAAATACTAA
AGCAGAGCGGTCAGGGGCGAACCGTTCTCCAACCCTTTGGCCCCAGATGGCCATGATGTGGACGATCCTCATTCCTTCCA
CCAATCAAAACTCACAAATGAAGACTTCAGGAAGCTTCTCATGACCCCAAGGGCAGCACCCACCTCTGCACCACCGTCTA
AGTCACGTCACCATGAGATGCCAAGGGAGTACAATGAGGATGAAGACCCAGCTGCACGAAGAAGGAAAAAGAAAAGTTAT
TATGCCAAGCTACGCCAACAAGAAATTGAGAGAGAGCGGGAGCTAGCAGAGAAGTACCGGGACCGTGCCAAGGAACGGAG
AGATGGGGTGAACAAAGATTATGAGGAAACTGAGCTGATCAGCACCACAGCTAACTACAGAGCTGTGGGCCCCACTGCTG
AGGCGGACAAATCAGCTGCAGAGAAGAGAAGACAGTTGATCCAGGAGTCCAAATTCTTGGGTGGTGATATGGAACACACC
CATTTGGTGAAAGGCTTGGATTTTGCTCTGCTTCAGAAGGTACGAGCTGAGATTGCCAGCAAAGAAAAAGAGGAGGAAGA
ACTGATGGAAAAGCCCCAAAAGGAAACCAAGAAAGATGAAGATCCTGAGAATAAGATTGAATTTAAAACACGCCTGGGCC
GCAATGTTTATCGGATGCTCTTCAAGAGCAAAGCATATGAGAGGAATGAGCTGTTCCTGCCGGGTCGCATGGCCTATGTG
GTGGACTTGGATGATGAGTATGCCGACACGGACATCCCCACTACTCTTATTCGCAGCAAGGCTGATTGCCCCACCATGGA
GGCCCAGACTACACTGACCACAAATGATATTGTCATCAGTAAGCTCACCCAGATCCTTTCCTACCTGAGGCAGGGCACCC
GCAACAAGAAGCTCAAGAAGAAAGATAAAGGGAAGTTGGAAGAGAAGAAACCTCCTGAGGCCGACATGAACATTTTTGAA
GACATTGGCGATTATGTGCCCTCCACGACCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATGTTGACAAAGGACCTGGG
TCTGCCAAGGAGTTGATCAAGTCCATAAATGAGAAGTTTGCAGGGTCTGCTGGCTGGGAAGGCACTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAACAAGAAGGGCCCCTTAGGCCGCTGG
GACTTTGATACCCAGGAGGAATACAGCGAGTATATGAACAACAAGGAGGCTTTGCCTAAGGCTGCATTCCAGTATGGCAT
CAAAATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAAGAAACCAATGACAAGGCAGAACTTGATCGCCAATGGAAGAAGA
TTAGTGCAATCATTGAGAAAAGGAAGAAGATGGAAGCTGATGGGGTTGAAGTCAAAAGACCAAAATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 92 .76 RPM |
| SRP012922_cerebellum | 131 .01 RPM |
| SRP012922_heart | 46 .17 RPM |
| SRP012922_kidney | 79 .40 RPM |
| SRP012922_liver | 61 .61 RPM |
| SRP012922_lung | 125 .23 RPM |
| SRP012922_quadricep_muscle | 44 .66 RPM |
| SRP012922_spleen | 131 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dipodomys ordii | ENSDORG00000006584 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000113141 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000013374 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000008152 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014281 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015861 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000007388 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_618 | 89.91 | 58.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_714 | 90.38 | 55.94 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_960 | 86.02 | 57.91 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000009727 retrocopies