RetrogeneDB ID: | retro_dord_130 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_3716:309224..309845(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ik | ||
Ensembl ID: | ENSDORG00000006584 | ||
Aliases: | None | ||
Description: | IK cytokine [Source:MGI Symbol;Acc:MGI:1345142] |
Percent Identity: | 90.95 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAV |
M.REYNEDEDPAARRRKK.SYYAKLRQQEIE...ELAEKYRDRAKERRDGVNKDYE.T..IST.ANYRAV | |
Retrocopy | MSREYNEDEDPAARRRKKRSYYAKLRQQEIEGASELAEKYRDRAKERRDGVNKDYEKTKPISTAANYRAV |
Parental | GPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKD |
GPTAE.DKSAAEKR.QLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIAS..KEEEELMEKPQKETKKD | |
Retrocopy | GPTAEVDKSAAEKR-QLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIAS--KEEEELMEKPQKETKKD |
Parental | EDPENKIEFKTRLGRNVYRMLFKSKAYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQ |
EDPENKI.FKTRLGRNVY..LFKSKA.ERNELFLPGRMAYVVDLDDEY.DTDIPTTLIRSKADCPT.EAQ | |
Retrocopy | EDPENKIQFKTRLGRNVYHTLFKSKADERNELFLPGRMAYVVDLDDEYGDTDIPTTLIRSKADCPTVEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009727 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000006584 | 4 retrocopies | |
Homo sapiens | ENSG00000113141 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013374 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008152 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014281 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015861 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007388 | 3 retrocopies |