Parental gene:

RBM17, ENSECAG00000008939

Aliases:None
Description:RNA binding motif protein 17 [Source:HGNC Symbol;Acc:16944]
Organism:Horse (Equus caballus)
Coordinates:29:27788555..27808241(-)


>ENSECAG00000008939
ATGTCCCTGTATGATGACCTGGGAGTGGAGACCAGTGACTCGAAAACAGAAGGCTGGTCCAAAAACTTCAAACTTCTGCA
GTCTCAGCTTCAGGTGAAGAAGGCAGCTCTCACTCAGGCAAAGAGCCAGAGGACAAAGCAAAGCACGGTCCTCGCCCCAG
TCATCGACCTGAAGCGAGCTGGCTCTTCAGACGACCGGCAGATCGTGGACACCCCGCCGCACGCAGCCGCCGGCCTGAAG
GATCCTGTTCCCAGTGGATTTTCTGCAGGAGAAGTTCTGATTCCTTTAGCTGATGAATATGATCCTATGTTTCCTAATGA
TTATGAGAAAGTAGTGAAGCGCCAAAGAGAAGAACGACAGAGACAGCGGGAGCTGGAAAGACAAAAAGAAATAGAAGAGA
GAGAAAAGAGGCGTAAAGACAGACATGAAGCTAGTGGGTTTTCAAGGCGACCAGATCCAGATTCTGATGAAGATGAAGAT
TATGAGCGAGAGAGGAGGAAAAGAAGTATGGGCGGAGCTGCCATCGCACCACCCACTTCTCTTGTAGAGAAAGACAAAGA
GTTACCCCGAGATTTTCCGTATGAAGAGGATTCGAGACCTCGCTCACAGTCTTCCAAAGCTGCCATCCCTCCCCCGGTGT
ACGAGGAGCAAGACAGACCCCGATCACCGACCGGACCTGGCAACTCCTTCCTTGCCAACATGGGTGGCACAGTAGCACAT
AAAATCATGCAGAAGTATGGCTTCCGGGAAGGCCAGGGTCTTGGGAAGCACGAGCAAGGGCTGAGCACAGCGTTGTCGGT
AGAGAAGACAAGCAAGCGAGGCGGCAAGATCATTGTGGGCGACGCCACGGAGAAAGATGCAGCCAAGAAGTCGGATTCAA
ATCCATTGACTGAAATACTGAAGTGTCCTACTAAAGTGGTCCTACTAAGGAACATGGTTGGTGCAGGAGAGGTAGATGAA
GACTTGGAAGTTGAAACCAAGGAAGAATGTGAAAAATATGGCAAAGTTGGAAAATGTGTGATATTTGAAATTCCTGGTGC
CCCTGATGATGAAGCAGTACGAATATTTTTAGAATTTGAAAGAGTTGAATCAGCAATTAAAGCTGTTGTTGATCTGAACG
GGAGGTATTTTGGTGGACGGGTGGTAAAAGCATGTTTCTACAATTTGGATAAATTCAGGGTCTTGGATTTGGCGGAACAA
GTTTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 16 .28 RPM
SRP021940_embryo 26 .57 RPM
SRP021940_cerebellum 16 .00 RPM
SRP021940_testis 56 .97 RPM
SRP021940_placental_villous 15 .01 RPM
SRP021940_articular_cartilage 11 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021951 ortholog_one2one 2 retrogenes
retro_btau_1057, retro_btau_530,
Canis familiaris ENSCAFG00000005206 ortholog_one2one 1 retrogene
retro_cfam_844,
Callithrix jacchus ENSCJAG00000020573 ortholog_one2one 1 retrogene
retro_cjac_432,
Erinaceus europaeus ENSEEUG00000013077 ortholog_one2one 1 retrogene
retro_eeur_390,
Homo sapiens ENSG00000134453 ortholog_one2one 1 retrogene
retro_hsap_1551,
Macropus eugenii ENSMEUG00000011347 ortholog_one2one 1 retrogene
retro_meug_438,
Macaca mulatta ENSMMUG00000015152 ortholog_one2many 2 retrogenes
retro_mmul_1209, retro_mmul_771,
Mus musculus ENSMUSG00000037197 ortholog_one2one 1 retrogene
retro_mmus_2855,
Otolemur garnettii ENSOGAG00000015687 ortholog_one2one 1 retrogene
retro_ogar_1119,
Pongo abelii ENSPPYG00000002067 ortholog_one2many 1 retrogene
retro_pabe_1284,
Pan troglodytes ENSPTRG00000002265 ortholog_one2one 1 retrogene
retro_ptro_1044,
Ictidomys tridecemlineatus ENSSTOG00000013591 ortholog_one2one 1 retrogene
retro_itri_1376,
Tursiops truncatus ENSTTRG00000001344 ortholog_one2one 1 retrogene
retro_ttru_1758,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_547 94.01 100.00
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Download FASTA sequences of all ENSECAG00000008939 retrocopies