Parental gene:

PDZD11, ENSECAG00000010771

Aliases:None
Description:PDZ domain containing 11 [Source:HGNC Symbol;Acc:28034]
Organism:Horse (Equus caballus)
Coordinates:X:52256529..52258587(-)


>ENSECAG00000010771
ATGGACAACCGGATTCCTTATGATGACTACCCAGTGGTTTTCCTGCCTGCCTATGAGAATCCTCCAGCATGGATTCCTCC
TCATGAGAGGGTATACCACCCAGACTACAATAATGAGTTGACCCAGTTTCTGCCCCGAATTGTCACACTGAAGAAACCCC
CTGGAGCTCAGTTGGGGTTTAACATCCGAGGAGGAAAGGCCTCCCAGCTAGGCATCTTCATCTCCAAGGTCATTCCCGAC
TCTGATGCCCATCGAGCAGGACTTCAGGAAGGGGACCAAGTCCTAGCTGTGAATGATGTGGATTTCCAAGATATTGAGCA
CAGCAAGGCTGTTGAGATCCTGAAGACAGCCCGTGAAATCAGCATGCGTGTCCGCTTCTTTCCCTACAATTATCATCGTC
AAAAAGAGAGGACTGTGCACTAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 12 .60 RPM
SRP021940_embryo 23 .42 RPM
SRP021940_cerebellum 23 .63 RPM
SRP021940_testis 11 .57 RPM
SRP021940_placental_villous 22 .32 RPM
SRP021940_articular_cartilage 7 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009203 ortholog_one2one 1 retrogene
retro_amel_158,
Canis familiaris ENSCAFG00000028800 ortholog_one2one 1 retrogene
retro_cfam_1549,
Callithrix jacchus ENSCJAG00000012432 ortholog_one2many 1 retrogene
retro_cjac_138,
Echinops telfairi ENSETEG00000008626 ortholog_one2one 3 retrogenes
retro_etel_1026, retro_etel_1863, retro_etel_921,
Homo sapiens ENSG00000120509 ortholog_one2one 1 retrogene
retro_hsap_1439,
Gorilla gorilla ENSGGOG00000006626 ortholog_one2one 1 retrogene
retro_ggor_1108,
Macropus eugenii ENSMEUG00000012040 ortholog_one2one 1 retrogene
retro_meug_1858,
Macaca mulatta ENSMMUG00000013938 ortholog_one2one 1 retrogene
retro_mmul_2265,
Mustela putorius furo ENSMPUG00000004220 ortholog_one2one 1 retrogene
retro_mputfur_823,
Nomascus leucogenys ENSNLEG00000000863 ortholog_one2one 1 retrogene
retro_nleu_1414,
Otolemur garnettii ENSOGAG00000016423 ortholog_one2one 1 retrogene
retro_ogar_2975,
Pongo abelii ENSPPYG00000020929 ortholog_one2one 1 retrogene
retro_pabe_1193,
Pan troglodytes ENSPTRG00000021995 ortholog_one2one 1 retrogene
retro_ptro_981,
Sarcophilus harrisii ENSSHAG00000005380 ortholog_one2one 1 retrogene
retro_shar_149,
Tupaia belangeri ENSTBEG00000002767 ortholog_one2one 2 retrogenes
retro_tbel_3155, retro_tbel_3203,
Tursiops truncatus ENSTTRG00000007864 ortholog_one2one 1 retrogene
retro_ttru_953,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_940 76.77 70.71
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Download FASTA sequences of all ENSECAG00000010771 retrocopies