Parental gene:

ATG3, ENSECAG00000011954

Aliases:None
Description:autophagy related 3 [Source:HGNC Symbol;Acc:20962]
Organism:Horse (Equus caballus)
Coordinates:19:45129665..45156006(+)


>ENSECAG00000011954
ATGCAGAATGTGATTAACACGGTGAAGGGAAAGGCACTGGAAGTGGCTGAGTACCTGACCCCGGTCCTCAAGGAATCAAA
GTTTAAGGAAACAGGTGTTATCACCCCAGAAGAGTTTGTGGCAGCTGGAGATCACTTAGTCCATCACTGTCCAACATGGC
AATGGGCTACAGGGGAAGAATTGAAAGTGAAGGCATACCTACCAACAGGCAAACAATTTTTGGTTACCAAAAATGTGCCA
TGCTACAAGCGTTGCAAACAGATGGAATATTCCGATGAGTTGGAAGCTATCATTGAAGAAGATGATGGCGATGGGGGATG
GGTAGATACTTATCATAATACAGGTATTGCAGGAATAACCGAAGCAGTTAAGGAGATTACACTGGAAAGCAAGGACAGTA
TAAAACTCCAAGATTGCTCAGCATTATGTGAGGAGGAAGAAGAGGAAGATGAAGGAGAAGCTGCAGATATGGAAGAATAT
GAAGAGAGTGGATTGTTGGAAACAGATGAGGCTACCCTAGACACAAGGAAAATAGTAGAAGCTTGTAAAGCTAAAACTGA
TGCTGGAGGTGAAGATGCTATTTTGCAAACCAGAACTTACGACCTTTACATCACTTACGATAAATATTACCAGACACCAC
GACTATGGTTGTTTGGCTATGATGAGCAACGGCAGCCTTTAACAGTTGAGCACATGTATGAAGACATCAGTCAAGATCAT
GTGAAGAAAACAGTGACCATTGAAAATCACCCTCATCTCCCACCACCACCTATGTGTTCAGTTCACCCATGCAGGCATGC
TGAGGTGATGAAGAAGATCATTGAGACTGTTGCAGAAGGAGGGGGAGAACTTGGTGTTCATATGTATCTTCTAATTTTCT
TGAAATTTGTACAAGCTGTCATTCCAACAATAGAATATGACTACACAAGACACTTCACAATGTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 19 .33 RPM
SRP021940_embryo 17 .42 RPM
SRP021940_cerebellum 24 .72 RPM
SRP021940_testis 57 .87 RPM
SRP021940_placental_villous 22 .61 RPM
SRP021940_articular_cartilage 12 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018116 possible_ortholog 1 retrogene
retro_amel_645,
Callithrix jacchus ENSCJAG00000020358 ortholog_one2one 1 retrogene
retro_cjac_2756,
Homo sapiens ENSG00000144848 ortholog_one2one 1 retrogene
retro_hsap_2479,
Gorilla gorilla ENSGGOG00000006637 ortholog_one2one 1 retrogene
retro_ggor_1544,
Myotis lucifugus ENSMLUG00000001573 ortholog_one2one 1 retrogene
retro_mluc_1025,
Macaca mulatta ENSMMUG00000014232 ortholog_one2one 1 retrogene
retro_mmul_594,
Mustela putorius furo ENSMPUG00000000321 possible_ortholog 2 retrogenes
retro_mputfur_1064, retro_mputfur_1614,
Nomascus leucogenys ENSNLEG00000004302 ortholog_one2one 2 retrogenes
retro_nleu_268, retro_nleu_331,
Oryctolagus cuniculus ENSOCUG00000015651 ortholog_one2many 1 retrogene
retro_ocun_1219,
Pongo abelii ENSPPYG00000013548 ortholog_one2one 1 retrogene
retro_pabe_1827,
Pan troglodytes ENSPTRG00000015220 ortholog_one2one 1 retrogene
retro_ptro_1434,
Pteropus vampyrus ENSPVAG00000009568 ortholog_one2one 1 retrogene
retro_pvam_1399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_594 66.51 66.56
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Download FASTA sequences of all ENSECAG00000011954 retrocopies