RetrogeneDB ID: | retro_nleu_268 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397262.1:3064796..3065549(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATG3 | ||
Ensembl ID: | ENSNLEG00000004302 | ||
Aliases: | None | ||
Description: | Autophagy-related protein 3 [Source:UniProtKB/TrEMBL;Acc:G1QWE6] |
Percent Identity: | 63.81 % |
Parental protein coverage: | 80.89 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | VINTVKG-KALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWAT-GEELKVKAYLPTGK |
.IN.VK..KALEV.EYLT.......FK.T.VITP.EF.AAGDHL..HCPT.QWAT.G...K..A.LPTGK | |
Retrocopy | LINMVKE<KALEVTEYLT*-FSRNQFKDTAVITPKEFIAAGDHLAVHCPTQQWAT>GKNWK-EA*LPTGK |
Parental | QFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSA |
.FLV.KNV.CY...KQ..YS.ELEAI.E.DDG...WVDT.H.TGI.GI...V.EI....K..I.LQ.CSA | |
Retrocopy | *FLVAKNVACYIQSKQTAYSGELEAITE-DDGGRAWVDTHHSTGIAGINK*VEEIIPISKNGIKLQNCSA |
Parental | LCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQ |
L.EEEE..DEG....ME.YEESGLLE.D.AT.D.RKIVEACKA..D.GGEDA.LQT.T.DLYI.Y.KYYQ | |
Retrocopy | L*EEEE-KDEGKSTFME*YEESGLLEADKATPDERKIVEACKA*SDVGGEDALLQTKTCDLYIIYGKYYQ |
Parental | TPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIEN-HPHLPPPP |
T..LW.FGYD...Q..T.EHMY.DI.QDH.KKTVT.E.....LPPPP | |
Retrocopy | TAQLWFFGYDGEQQIFTAEHMYKDIIQDHMKKTVTTESPSTNLPPPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018116 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020358 | 1 retrocopy | |
Equus caballus | ENSECAG00000011954 | 1 retrocopy | |
Homo sapiens | ENSG00000144848 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006637 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001573 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014232 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000321 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004302 | 2 retrocopies |
retro_nleu_268 , retro_nleu_331,
|
Oryctolagus cuniculus | ENSOCUG00000015651 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013548 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015220 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009568 | 1 retrocopy |