Parental gene:

ENSECAG00000012046

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:6:6468058..6470127(+)


>ENSECAG00000012046
CAGGCCAAACGCACCAAGAAGGTCGGGATCGTCGGCAAGTACGGCACGCGGTATGGCGCCTCCCTGAGGAAGATGGTGAA
GAAGATTGAGATCAGCCAGCACGCCAAGTACACGTGCTCCTTCTGCGGGAAGACGAAGATGAAGCGGCGCGCGGTGGGCA
TCTGGCACTGCGGCTCCTGCATGAAGACGGTGGCCGGCGGCGCCTGGACCTACAACACCACTTCTGCCGTCACAGTAAAG
TCCGCCATCAGAAGACTGAAGGAATTGAAAGACCAGTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 721 .05 RPM
SRP021940_cerebellum 396 .92 RPM
SRP021940_embryo 399 .91 RPM
SRP021940_placental_villous 333 .70 RPM
SRP021940_synovial_membrane 544 .29 RPM
SRP021940_testis 352 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003377 ortholog_one2one 24 retrogenes
retro_amel_109, retro_amel_1170, retro_amel_1197, retro_amel_1204, retro_amel_1248, retro_amel_1310, retro_amel_1349, retro_amel_1534, retro_amel_1597, retro_amel_1724, retro_amel_1815, retro_amel_1910, retro_amel_1929, retro_amel_248, retro_amel_424, retro_amel_428, retro_amel_475, retro_amel_482, retro_amel_606, retro_amel_737, retro_amel_809, retro_amel_83, retro_amel_920, retro_amel_942,
Callithrix jacchus ENSCJAG00000012417 ortholog_one2one 7 retrogenes
retro_cjac_1060, retro_cjac_1514, retro_cjac_159, retro_cjac_237, retro_cjac_3178, retro_cjac_335, retro_cjac_888,
Latimeria chalumnae ENSLACG00000011578 ortholog_one2many 1 retrogene
retro_lcha_71,
Loxodonta africana ENSLAFG00000006849 ortholog_one2one 5 retrogenes
retro_lafr_1010, retro_lafr_1015, retro_lafr_109, retro_lafr_987, retro_lafr_991,
Macropus eugenii ENSMEUG00000004680 ortholog_one2one 23 retrogenes
retro_meug_1094, retro_meug_111, retro_meug_1120, retro_meug_1289, retro_meug_1302, retro_meug_1399, retro_meug_1600, retro_meug_1705, retro_meug_2021, retro_meug_2061, retro_meug_2143, retro_meug_2173, retro_meug_24, retro_meug_290, retro_meug_458, retro_meug_463, retro_meug_496, retro_meug_502, retro_meug_571, retro_meug_691, retro_meug_813, retro_meug_814, retro_meug_83,
Myotis lucifugus ENSMLUG00000000762 ortholog_one2one 1 retrogene
retro_mluc_208,
Petromyzon marinus ENSPMAG00000000001 ortholog_one2many 1 retrogene
retro_pmar_11,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_48 88.24 73.91
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2. retro_ecab_220 66.67 98.91
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3. retro_ecab_552 81.69 77.17
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4. retro_ecab_735 82.56 93.48
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5. retro_ecab_741 75.00 98.91
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6. retro_ecab_803 80.46 93.48
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Download FASTA sequences of all ENSECAG00000012046 retrocopies