Parental gene: | SGOL1, ENSECAG00000012475 |
| Aliases: | None |
| Description: | shugoshin-like 1 (S. pombe) [Source:HGNC Symbol;Acc:25088] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 16:62025429..62034883(+) |
>ENSECAG00000012475
ATGGCCAAGGAAAGGTGCCTTAAAAAGTCCTTTCAAGATAGTCTTGAAGACATCAAGAAACGAATGAAAGAGAAAAGGAA
TAAAAATTTGGCAGAGATTGGCAAACGAAAGTCTTTTATAGCCGCACCATGCCAAATAATCACCAACACTTCTACACTGC
TAAAAAACTACCAAGACAACAATAGAATGTTAGTTTTAGCTTTGGAAAATGAAAAATCCAAAGTGAGAGAAGCCGAAGAT
ATCATCCTACAGCTGAGAAAAGAATGTTACTACCTCACATGTCAGCTATATACATTGAAGGAAAAACTTACTTCACAAGA
AGCAGAAGGAACTGCTCAGAACCAGGAAGTATGTCTTTCTGAAATGGATTCCAATGGTGACAACTCCAGGGATTTATTTG
TGACGGATTTACCGCAAGTTCCTCTTCAGGAAGCTCACCTTCCAGGACCAGGAGAATCGTTCCAGATAGAAGAGCAAATA
CCTACCATTCCTAATCAAGACAGACAGAGATTTGATTTGGATTCAGGTGAAGATAAGTCTACTGATAATGTCTTACCTAG
AACTGTATCTCTCCGTCGCAGTTTAAAGAAACGTTTTAACAATCTGTGTCAATTCGATACCTTGGATGATTTTGAAATCA
GTCACTTGTCAGGACAGTCTTTTGAACTGGAAAGAATTAGATTTGTAGACCCACTAATAAGCGTGCACATACCTGAAAAT
GTAGAAGAAAATGTTTGTCAATGGAACAAGGATCAAATTAACTTATCACCAAAGCTCATTCACCCAGGAAAATCTACTAA
AACGAACGAAGACATTTTAGAGTATAAATCTGAACCAACTAAAAGAAAGCATAGAGATGCGCACGGAAGAAAAGAGAAAA
GAAAAGCTAACAGAAGGAGAAAATCAAAATGTATATCAAAGTATAAATGGAGCAAAAGTGTAAATAAAAAAACTGTTTCC
AAAAGTAAGTTGGATGGATCTATCACTTCCAATGATGCTTACAATTTTAATTTGGAAGAGGGTGTTCATCTCACTCCTTT
CCGACAAAAAATGAGCAATGATTCTACAAGAGAAGAGAACAGCTATGAATCTGAAGTGAGCATTTGTGAATCAGGTGGTT
CAGGAGATGATTCTGATGACCTCTATTTGCCCACTTGCAAGTCCAGTCAAGATCTCACCAGCGAATCAAATAGGGGCCCA
GTCACCAGGCCTCAGTCTAAAAGAGTGCTAAAATATTCGGCTGGAAAAGAGACAGAGGGTTCTAAGCCAACAGAAACTCC
TACCAGTGCGCTACCTGAAACTCACCAGTCATCTCATCGTAGCCTGAAGGATATCACCAATGTCCCCATGGATCCTGTAG
TGAAAATCAGAAAACTATCTCTTTCTCCCAAAAAGAATAAAGAAAGCCCAGCAGCGTCTCTGCCTAAGCGCAGGTGCACC
GCCAGTGTGAACTACAAGGAACCCACACTCGCTTCGAAACTGAGAAGAGGGGACCCTTTTACAGATTTGTGCTTCTTGAA
TTCGCCTATTTTCAAGCAGAGAAAGGATTCCAGATGCAGTTCTAAAAAAAAAGTTTGA
ATGGCCAAGGAAAGGTGCCTTAAAAAGTCCTTTCAAGATAGTCTTGAAGACATCAAGAAACGAATGAAAGAGAAAAGGAA
TAAAAATTTGGCAGAGATTGGCAAACGAAAGTCTTTTATAGCCGCACCATGCCAAATAATCACCAACACTTCTACACTGC
TAAAAAACTACCAAGACAACAATAGAATGTTAGTTTTAGCTTTGGAAAATGAAAAATCCAAAGTGAGAGAAGCCGAAGAT
ATCATCCTACAGCTGAGAAAAGAATGTTACTACCTCACATGTCAGCTATATACATTGAAGGAAAAACTTACTTCACAAGA
AGCAGAAGGAACTGCTCAGAACCAGGAAGTATGTCTTTCTGAAATGGATTCCAATGGTGACAACTCCAGGGATTTATTTG
TGACGGATTTACCGCAAGTTCCTCTTCAGGAAGCTCACCTTCCAGGACCAGGAGAATCGTTCCAGATAGAAGAGCAAATA
CCTACCATTCCTAATCAAGACAGACAGAGATTTGATTTGGATTCAGGTGAAGATAAGTCTACTGATAATGTCTTACCTAG
AACTGTATCTCTCCGTCGCAGTTTAAAGAAACGTTTTAACAATCTGTGTCAATTCGATACCTTGGATGATTTTGAAATCA
GTCACTTGTCAGGACAGTCTTTTGAACTGGAAAGAATTAGATTTGTAGACCCACTAATAAGCGTGCACATACCTGAAAAT
GTAGAAGAAAATGTTTGTCAATGGAACAAGGATCAAATTAACTTATCACCAAAGCTCATTCACCCAGGAAAATCTACTAA
AACGAACGAAGACATTTTAGAGTATAAATCTGAACCAACTAAAAGAAAGCATAGAGATGCGCACGGAAGAAAAGAGAAAA
GAAAAGCTAACAGAAGGAGAAAATCAAAATGTATATCAAAGTATAAATGGAGCAAAAGTGTAAATAAAAAAACTGTTTCC
AAAAGTAAGTTGGATGGATCTATCACTTCCAATGATGCTTACAATTTTAATTTGGAAGAGGGTGTTCATCTCACTCCTTT
CCGACAAAAAATGAGCAATGATTCTACAAGAGAAGAGAACAGCTATGAATCTGAAGTGAGCATTTGTGAATCAGGTGGTT
CAGGAGATGATTCTGATGACCTCTATTTGCCCACTTGCAAGTCCAGTCAAGATCTCACCAGCGAATCAAATAGGGGCCCA
GTCACCAGGCCTCAGTCTAAAAGAGTGCTAAAATATTCGGCTGGAAAAGAGACAGAGGGTTCTAAGCCAACAGAAACTCC
TACCAGTGCGCTACCTGAAACTCACCAGTCATCTCATCGTAGCCTGAAGGATATCACCAATGTCCCCATGGATCCTGTAG
TGAAAATCAGAAAACTATCTCTTTCTCCCAAAAAGAATAAAGAAAGCCCAGCAGCGTCTCTGCCTAAGCGCAGGTGCACC
GCCAGTGTGAACTACAAGGAACCCACACTCGCTTCGAAACTGAGAAGAGGGGACCCTTTTACAGATTTGTGCTTCTTGAA
TTCGCCTATTTTCAAGCAGAGAAAGGATTCCAGATGCAGTTCTAAAAAAAAAGTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 0 .44 RPM |
| SRP021940_embryo | 9 .90 RPM |
| SRP021940_cerebellum | 0 .10 RPM |
| SRP021940_testis | 3 .52 RPM |
| SRP021940_placental_villous | 0 .19 RPM |
| SRP021940_articular_cartilage | 0 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013948 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000008694 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000023940 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000022499 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_846 | 55.88 | 50.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000012475 retrocopies