Parental gene: | COPS4, ENSECAG00000015209 |
| Aliases: | None |
| Description: | COP9 signalosome subunit 4 [Source:HGNC Symbol;Acc:16702] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 3:54026618..54072583(-) |
>ENSECAG00000015209
GCTGGAAGAAAGATGGCGGCAGCCGTGCGACAGGATTTGGCTCAGCTCATGAATTCGAGCGGCTCTCATAAAGATCTGGC
GGGCAAGTATCGCCAGATCCTGGAAAAAGCCATTCAGTTATCTGGGGCAGAACAACTAGAAGCTTTGAAAGCTTTTGTGG
AAGCAATGGTAAATGAGAATGTCAGCCTCGTGATCTCTCGACAGTTGCTGACTGATTTCTGCACACATCTGCCTAACCTG
CCTGATAGCACAGCCAAAGAAATCTATCATTTCACCTTGGAGAAGATCCAGCCTAGAGTCATTTCATTTGAGGAGCAGGT
TGCTTCCATAAGACAGCATCTTGCATCTATATATGAGAAAGAAGAAGACTGGAGAAATGCAGCCCAAGTGTTGGTGGGAA
TTCCTTTGGAAACAGGACAAAAACAGTACAATGTAGATTATAAACTGGAGACATACCTGAAGATTGCTAGGCTATATCTG
GAGGATGATGATCCCGTCCAGGCAGAGGCTTACATAAATCGAGCATCATTGCTTCAGAATGAATCAACCAACGAACAGTT
ACAGATACATTATAAGGTATGCTATGCACGTGTTCTTGATTACAGAAGAAAATTCATTGAAGCTGCACAAAGGTACAATG
AGCTCTCTTACAAGACAATAGTGCACGAAAGTGAAAGACTAGAGGCCTTAAAACATGCTTTGCACTGTACCATCTTAGCA
TCAGCAGGACAGCAGCGTTCTCGGATGCTAGCTACTCTTTTTAAGGATGAAAGGTGCCAGCAACTTGCTGCTTATGGGAT
CCTAGAGAAAATGTACCTAGATAGGATCATCAGAGGAAATCAACTTCAAGAATTTGCTGCCATGCTGATGCCTCACCAAA
AAGCAACCACAGCTGATGGTTCCAGCATTTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCAGAAAAGATAGCATCACAAATGAT
AACAGAAGGCCGTATGAATGGATTTATTGATCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAGCCCTGCCAACAT
GGGACAAACAGATCCAGTCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAGACAGCACCAGAATGGACA
GCACAAGCCATGGAAGCCCAGATGGCCCAGTGA
GCTGGAAGAAAGATGGCGGCAGCCGTGCGACAGGATTTGGCTCAGCTCATGAATTCGAGCGGCTCTCATAAAGATCTGGC
GGGCAAGTATCGCCAGATCCTGGAAAAAGCCATTCAGTTATCTGGGGCAGAACAACTAGAAGCTTTGAAAGCTTTTGTGG
AAGCAATGGTAAATGAGAATGTCAGCCTCGTGATCTCTCGACAGTTGCTGACTGATTTCTGCACACATCTGCCTAACCTG
CCTGATAGCACAGCCAAAGAAATCTATCATTTCACCTTGGAGAAGATCCAGCCTAGAGTCATTTCATTTGAGGAGCAGGT
TGCTTCCATAAGACAGCATCTTGCATCTATATATGAGAAAGAAGAAGACTGGAGAAATGCAGCCCAAGTGTTGGTGGGAA
TTCCTTTGGAAACAGGACAAAAACAGTACAATGTAGATTATAAACTGGAGACATACCTGAAGATTGCTAGGCTATATCTG
GAGGATGATGATCCCGTCCAGGCAGAGGCTTACATAAATCGAGCATCATTGCTTCAGAATGAATCAACCAACGAACAGTT
ACAGATACATTATAAGGTATGCTATGCACGTGTTCTTGATTACAGAAGAAAATTCATTGAAGCTGCACAAAGGTACAATG
AGCTCTCTTACAAGACAATAGTGCACGAAAGTGAAAGACTAGAGGCCTTAAAACATGCTTTGCACTGTACCATCTTAGCA
TCAGCAGGACAGCAGCGTTCTCGGATGCTAGCTACTCTTTTTAAGGATGAAAGGTGCCAGCAACTTGCTGCTTATGGGAT
CCTAGAGAAAATGTACCTAGATAGGATCATCAGAGGAAATCAACTTCAAGAATTTGCTGCCATGCTGATGCCTCACCAAA
AAGCAACCACAGCTGATGGTTCCAGCATTTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTCGAAGAACTTGGAGCTCTTTTAGAGATCCCTGCAGCTAAGGCAGAAAAGATAGCATCACAAATGAT
AACAGAAGGCCGTATGAATGGATTTATTGATCAGATTGATGGAATAGTTCATTTTGAAACACGAGAAGCCCTGCCAACAT
GGGACAAACAGATCCAGTCACTTTGTTTCCAAGTGAATAACCTTTTGGAGAAAATTAGTCAGACAGCACCAGAATGGACA
GCACAAGCCATGGAAGCCCAGATGGCCCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 0 .47 RPM |
| SRP021940_embryo | 0 .97 RPM |
| SRP021940_cerebellum | 1 .40 RPM |
| SRP021940_testis | 1 .98 RPM |
| SRP021940_placental_villous | 1 .15 RPM |
| SRP021940_articular_cartilage | 0 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Monodelphis domestica | ENSMODG00000019311 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000014708 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000027198 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017599 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_315 | 100.00 | 79.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_600 | 96.36 | 80.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000015209 retrocopies