Parental gene:

PSMB8, ENSECAG00000018887

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 8 [Source:HGNC Symbol;Acc:9545]
Organism:Horse (Equus caballus)
Coordinates:20:33417996..33420793(-)


>ENSECAG00000018887
ATGGCGCTGCTAGAGGTGTGCGGAGCCTCCCCACGGCAGCGGGCAGACTGGGCTCTCCCCGCCGCGGGAAGCGGGCATCG
CTCGGTCCCTGGACACTACAGTTTCTCTATGCGATCTCCGGAGCTCGCCCTCCCGCGGGGAATGCAGCCCACTGACTTCC
TCCAGTCCCTGGGTGGAAATGGAGAAGGGAACGTTCAGATTGAGATGGCCCATGGCACTACCACGCTCGCCTTCAAGTTC
CAGCATGGGGTGATTGTGGCGGTGGATTCTCGGGCCTCAGCCGGGAGTTATATTGCCACCTTACGGGTGAACAAGGTGAT
TGAGATTAACCCTTATCTGCTTGGCACCATGTCTGGCTGCGCAGCGGACTGTCAGTACTGGGAGCGTCTGCTGGCCAAGG
AGTGCAGGCTGTACTATCTGCGGAATGGGGAGCGCATCTCGGTGTCCGCAGCCTCCAAACTGCTCTCCAACATGATGTGC
CAGTACCGGGGCATGGGCCTCTCCATGGGCAGCATGATCTGTGGCTGGGACAAGAAGGGTCCTGGACTCTACTATGTGGA
TGAAAATGGGACTCGGCTCTCAGGAAACATGTTCTCCACTGGTAGTGGGAACTCCTACGCCTACGGGGTCATGGATAGTG
GCTATCGGAACAATCTTAGCATTGAAGAGGCCTACGACCTGGGCCGCAGGGCTATTGTTCATGCCACCCACCGAGACAGC
TATTCTGGAGGCGTAGTCAATATGTACCACATGAAGGAGGATGGTTGGGTGAAGGTGGAAAGTACGGACGTCAGTGACCT
GCTGCACCAGTATCGGGAGGCCAGTCACTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 38 .84 RPM
SRP021940_embryo 1 .33 RPM
SRP021940_cerebellum 6 .70 RPM
SRP021940_testis 6 .71 RPM
SRP021940_placental_villous 12 .03 RPM
SRP021940_articular_cartilage 1 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002026 ortholog_one2one 1 retrogene
retro_amel_27,
Bos taurus ENSBTAG00000003039 ortholog_one2one 1 retrogene
retro_btau_11,
Canis familiaris ENSCAFG00000000829 ortholog_one2one 1 retrogene
retro_cfam_75,
Felis catus ENSFCAG00000023131 ortholog_one2one 1 retrogene
retro_fcat_30,
Loxodonta africana ENSLAFG00000003213 ortholog_one2one 1 retrogene
retro_lafr_65,
Microcebus murinus ENSMICG00000015254 ortholog_one2one 1 retrogene
retro_mmur_33,
Myotis lucifugus ENSMLUG00000013876 ortholog_one2one 1 retrogene
retro_mluc_285,
Monodelphis domestica ENSMODG00000014366 ortholog_one2one 1 retrogene
retro_mdom_179,
Otolemur garnettii ENSOGAG00000013830 ortholog_one2one 1 retrogene
retro_ogar_256,
Procavia capensis ENSPCAG00000016741 ortholog_one2one 1 retrogene
retro_pcap_21,
Pan troglodytes ENSPTRG00000018022 ortholog_one2one 2 retrogenes
retro_ptro_1102, retro_ptro_97,
Pteropus vampyrus ENSPVAG00000002800 ortholog_one2one 1 retrogene
retro_pvam_20,
Sus scrofa ENSSSCG00000026951 ortholog_one2many 1 retrogene
retro_sscr_90,
Tupaia belangeri ENSTBEG00000007794 ortholog_one2one 1 retrogene
retro_tbel_2055,
Tarsius syrichta ENSTSYG00000007730 ortholog_one2one 1 retrogene
retro_tsyr_1639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_18 53.85 70.65
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Download FASTA sequences of all ENSECAG00000018887 retrocopies