Parental gene: | RDH13, ENSECAG00000023146 |
| Aliases: | None |
| Description: | retinol dehydrogenase 13 (all-trans/9-cis) [Source:HGNC Symbol;Acc:19978] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 10:24283047..24297089(-) |
>ENSECAG00000023146
ATGAACCGCTACCTCCTGCCGCTGTCCGTGCTGGGCACGGTGGCGGGTGGCGCCGTGCTGCTCAGGGACTATGTCGCTGG
CGGGGCCTGTCCCAGCAAGGCCACCATTCATGGGAAGACCGTCATTGTGACGGGCGCCAACACGGGCATCGGGAAGCAGA
CCGCCTTGGAGCTGGCCAAGAGAGGAGGCAATGTCATTCTGGCCTGTCGAGACATGGAGAAGTGTGAGGCGGCAGCAAAG
GAAATTCGCGGGGAGACCCTTAATCACCGTGTCAATGCGAGGCACCTGGACCTGGCCTCCCTCAGGTCCGTCCGAGAGTT
CGCCACGAAGATCCTTGCAGAGGAAGAGCAGGTGCACGTCCTGGTGAACAACGCGGCCGTGATGCGCTGCCCCCACTGGA
CCACTGAGGACGGCTTCGAGATGCAGTTTGGGGTCAACTACCTGGGTCACTTTCTTTTGACTAACTTACTGCTGGACAAG
CTGAAAGCCTCGGCCCCCTCGCGGATCATCAACCTCTCATCCTTGGCCCATGTTGCTGGGCACATAGACTTTGATGACTT
GAACTGGGAGAAGAGGAAGTATGACACCAAAGCAGCCTACTGCCAGAGTAAGCTGGCCATCGTCCTCTTCACCAAGGAGC
TGAGTCGGCGGCTGCAAGGTACGGGGGTGACCGTCAACGCTCTGCATCCCGGTGTAGCCAGGACGGAGCTGGGCAGACAC
ACAGGCCTGCACAGCTCTGCCTTCTCCAGTTTCATGCTCGGGCCCATCTTCTGGCTGCTGGTGAAGAGCCCCCAGCTGGC
GGCCCAGCCCAGCACCTACCTGGCCGTTGCGGAAGAATTGGAGGGCGTTTCTGGAAAGTACTTTGATGGACTCAAAGAGA
AGGCTCCAGCCCCTGAGGCTGAGGATGAGGAGGTAGCCCGGAGGCTTTGGGCTGAAAGTGCTCACCTGGTGGGCTTGGAG
ATGTCCCATGGGTCCTCTGTGAAGGGACAGCCCCTCCCTAAATAA
ATGAACCGCTACCTCCTGCCGCTGTCCGTGCTGGGCACGGTGGCGGGTGGCGCCGTGCTGCTCAGGGACTATGTCGCTGG
CGGGGCCTGTCCCAGCAAGGCCACCATTCATGGGAAGACCGTCATTGTGACGGGCGCCAACACGGGCATCGGGAAGCAGA
CCGCCTTGGAGCTGGCCAAGAGAGGAGGCAATGTCATTCTGGCCTGTCGAGACATGGAGAAGTGTGAGGCGGCAGCAAAG
GAAATTCGCGGGGAGACCCTTAATCACCGTGTCAATGCGAGGCACCTGGACCTGGCCTCCCTCAGGTCCGTCCGAGAGTT
CGCCACGAAGATCCTTGCAGAGGAAGAGCAGGTGCACGTCCTGGTGAACAACGCGGCCGTGATGCGCTGCCCCCACTGGA
CCACTGAGGACGGCTTCGAGATGCAGTTTGGGGTCAACTACCTGGGTCACTTTCTTTTGACTAACTTACTGCTGGACAAG
CTGAAAGCCTCGGCCCCCTCGCGGATCATCAACCTCTCATCCTTGGCCCATGTTGCTGGGCACATAGACTTTGATGACTT
GAACTGGGAGAAGAGGAAGTATGACACCAAAGCAGCCTACTGCCAGAGTAAGCTGGCCATCGTCCTCTTCACCAAGGAGC
TGAGTCGGCGGCTGCAAGGTACGGGGGTGACCGTCAACGCTCTGCATCCCGGTGTAGCCAGGACGGAGCTGGGCAGACAC
ACAGGCCTGCACAGCTCTGCCTTCTCCAGTTTCATGCTCGGGCCCATCTTCTGGCTGCTGGTGAAGAGCCCCCAGCTGGC
GGCCCAGCCCAGCACCTACCTGGCCGTTGCGGAAGAATTGGAGGGCGTTTCTGGAAAGTACTTTGATGGACTCAAAGAGA
AGGCTCCAGCCCCTGAGGCTGAGGATGAGGAGGTAGCCCGGAGGCTTTGGGCTGAAAGTGCTCACCTGGTGGGCTTGGAG
ATGTCCCATGGGTCCTCTGTGAAGGGACAGCCCCTCCCTAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 3 .46 RPM |
| SRP021940_embryo | 4 .09 RPM |
| SRP021940_cerebellum | 1 .77 RPM |
| SRP021940_testis | 2 .49 RPM |
| SRP021940_placental_villous | 7 .17 RPM |
| SRP021940_articular_cartilage | 0 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003306 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000015001 | within_species_paralog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000015998 | ortholog_one2one | 2 retrogenes | |
| Petromyzon marinus | ENSPMAG00000009095 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010398 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011484 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000003600 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016531 | ortholog_one2one | 1 retrogene | |
| Drosophila melanogaster | FBgn0033203 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_338 | 54.33 | 62.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000023146 retrocopies