Parental gene: | RDH13, ENSPPYG00000010398 |
| Aliases: | None |
| Description: | retinol dehydrogenase 13 (all-trans/9-cis) [Source:HGNC Symbol;Acc:19978] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 19:56904065..56928826(-) |
>ENSPPYG00000010398
ATGAGCCGGTACCTGCTGCCGCTGTCGGCGCTGGGCACGGTAGCAGGCGCCGCCGTGCTGCTCAAGGACTATGTCACCGG
TGGGGCTTGCCCCAGCAAGGCCACCATCCCTGGGAAGACGGTCATCGTGACGGGCGCCAACACAGGCATCGGGAAGCAGA
CGGCCTTGGAACTGGCCAGGAGAGGAGGCAACATCATCCTGGCCTGCCGAGACATGGAGAAGTGTGAGGCGGCGGCAAAG
GACATCCGCGGGGAGACCCTCAATCACCACGTCAACGCCCGGCACCTGGACTTGGCTTCCCTCCAGTCCATCCGAGAGTT
TGCAGCAAAGATCATTGAAGAGGAGGAGCGAGTGGACATTCTAATCAACAACGCAGGTGTGATGCGGTGTCCCCACTGGA
TCACCGAGGACGGCTTCGAGATGCAGTTTGGCGTTAACCACCTGGGTCACTTTCTCTTGACAAACTTGCTGCTGAACAAG
CTGAAAGCCTCAGCCCCTTCGCGGATCATCAACCTCTCGTCCTTGGCCCATGTTGCTGGGCACATAGACTTTGATGACTT
GAACTGGCAGACGAGGAAGTATAACACCAAAGCCGCCTACTGCCAGAGCAAGCTGGCCATCGTCCTCTTCACCAAGGAGC
TGAGCCGGCGGCTGCAAGGTTCTGGTGTGACTGTCAATGCCCTGCACCCCGGCGTGGCCAGGACAGAGCTGGGCAGACAC
ACGGGCATCCATGGCTCCACCTTCTCCAGCACCACACTCGGGCCCATCTTCTGGCTGCTGGTCAAGAGCCCCGAGCTGGC
TGCCCAGCCCAGCACATACCTGGCCGTGGCGGAGGAACTGGCAGATGTTTCGGGAAAGTATTTCGATGGACTCAAACAGA
AGGCCCCGGCCCCCGAGGCTGAGGATGAGGAGGTGGCCCGGAGGCTTTGGGCTGAAAGTGCCCGCCTGGTGGGCTTAGAG
GCTCCCTCTGTGAGGGAGCAGCCCCTCCCCAGATAA
ATGAGCCGGTACCTGCTGCCGCTGTCGGCGCTGGGCACGGTAGCAGGCGCCGCCGTGCTGCTCAAGGACTATGTCACCGG
TGGGGCTTGCCCCAGCAAGGCCACCATCCCTGGGAAGACGGTCATCGTGACGGGCGCCAACACAGGCATCGGGAAGCAGA
CGGCCTTGGAACTGGCCAGGAGAGGAGGCAACATCATCCTGGCCTGCCGAGACATGGAGAAGTGTGAGGCGGCGGCAAAG
GACATCCGCGGGGAGACCCTCAATCACCACGTCAACGCCCGGCACCTGGACTTGGCTTCCCTCCAGTCCATCCGAGAGTT
TGCAGCAAAGATCATTGAAGAGGAGGAGCGAGTGGACATTCTAATCAACAACGCAGGTGTGATGCGGTGTCCCCACTGGA
TCACCGAGGACGGCTTCGAGATGCAGTTTGGCGTTAACCACCTGGGTCACTTTCTCTTGACAAACTTGCTGCTGAACAAG
CTGAAAGCCTCAGCCCCTTCGCGGATCATCAACCTCTCGTCCTTGGCCCATGTTGCTGGGCACATAGACTTTGATGACTT
GAACTGGCAGACGAGGAAGTATAACACCAAAGCCGCCTACTGCCAGAGCAAGCTGGCCATCGTCCTCTTCACCAAGGAGC
TGAGCCGGCGGCTGCAAGGTTCTGGTGTGACTGTCAATGCCCTGCACCCCGGCGTGGCCAGGACAGAGCTGGGCAGACAC
ACGGGCATCCATGGCTCCACCTTCTCCAGCACCACACTCGGGCCCATCTTCTGGCTGCTGGTCAAGAGCCCCGAGCTGGC
TGCCCAGCCCAGCACATACCTGGCCGTGGCGGAGGAACTGGCAGATGTTTCGGGAAAGTATTTCGATGGACTCAAACAGA
AGGCCCCGGCCCCCGAGGCTGAGGATGAGGAGGTGGCCCGGAGGCTTTGGGCTGAAAGTGCCCGCCTGGTGGGCTTAGAG
GCTCCCTCTGTGAGGGAGCAGCCCCTCCCCAGATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .21 RPM |
| SRP007412_cerebellum | 2 .92 RPM |
| SRP007412_heart | 1 .87 RPM |
| SRP007412_kidney | 3 .51 RPM |
| SRP007412_liver | 2 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003306 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000023146 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000015998 | ortholog_one2one | 2 retrogenes | |
| Petromyzon marinus | ENSPMAG00000009095 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011484 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000003600 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016531 | ortholog_one2one | 1 retrogene | |
| Drosophila melanogaster | FBgn0033203 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1972 | 54.81 | 62.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000010398 retrocopies