Parental gene:

RBM3, ENSECAG00000024257

Aliases:None
Description:RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:9900]
Organism:Horse (Equus caballus)
Coordinates:X:39173746..39176886(+)


>ENSECAG00000024257
ATGTCCTCTGAAGAGGGGAAGCTCTTCGTGGGAGGGCTCAACTTCAACACCGATGAGCAGGCTCTGGAAGACCACTTCAG
CAGCTTCGGGCCTATTTCTGAGGTGGTCGTTGTCAAGGACCGGGAGACTCAGCGATCCCGGGGTTTTGGCTTCATTACCT
TCACCAATCCAGAGCACGCCTCAGATGCCATGAGAGCCATGAATGGAGAGTCTCTGGATGGTCGCCAGATCCGTGTGGAC
CACGCAGGCAAGTCGGCCCGGGGAACCAGAGGGGGTGCCTTTGGGGCCCACGGGCGTGGTCGCGGCTACTCCAGAGGTGG
TGGGGACCAGGGCTATGGGAGTGGCAGGTATGACAGTCGACCTGGAGGATATGGATATGGATATGGAAGGTCCAGAGACT
ATGGTGGCAGAAACCAGGGTGGTTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTACGACAACTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 165 .01 RPM
SRP021940_embryo 183 .38 RPM
SRP021940_cerebellum 114 .10 RPM
SRP021940_testis 40 .60 RPM
SRP021940_placental_villous 106 .66 RPM
SRP021940_articular_cartilage 231 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013718 ortholog_one2one 1 retrogene
retro_acar_197,
Ailuropoda melanoleuca ENSAMEG00000012653 ortholog_one2one 1 retrogene
retro_amel_519,
Bos taurus ENSBTAG00000025848 ortholog_one2one 1 retrogene
retro_btau_1144,
Dipodomys ordii ENSDORG00000000182 ortholog_one2one 1 retrogene
retro_dord_547,
Homo sapiens ENSG00000102317 ortholog_one2one 1 retrogene
retro_hsap_265,
Gadus morhua ENSGMOG00000012137 ortholog_one2many 1 retrogene
retro_gmor_4,
Loxodonta africana ENSLAFG00000007003 ortholog_one2many 1 retrogene
retro_lafr_1091,
Myotis lucifugus ENSMLUG00000003996 ortholog_one2one 1 retrogene
retro_mluc_1013,
Mus musculus ENSMUSG00000031167 ortholog_one2one 4 retrogenes
retro_mmus_2044, retro_mmus_2963, retro_mmus_3019, retro_mmus_501,
Nomascus leucogenys ENSNLEG00000007841 ortholog_one2one 2 retrogenes
retro_nleu_2591, retro_nleu_867,
Pongo abelii ENSPPYG00000020314 ortholog_one2one 1 retrogene
retro_pabe_40,
Pan troglodytes ENSPTRG00000021864 ortholog_one2one 1 retrogene
retro_ptro_222,
Pteropus vampyrus ENSPVAG00000015630 ortholog_one2one 1 retrogene
retro_pvam_953,
Sus scrofa ENSSSCG00000021591 ortholog_one2one 1 retrogene
retro_sscr_842,
Ictidomys tridecemlineatus ENSSTOG00000027493 ortholog_one2many 1 retrogene
retro_itri_142,
Tarsius syrichta ENSTSYG00000008670 ortholog_one2one 4 retrogenes
retro_tsyr_1733, retro_tsyr_197, retro_tsyr_2002, retro_tsyr_679,
Tursiops truncatus ENSTTRG00000008587 ortholog_one2one 3 retrogenes
retro_ttru_1898, retro_ttru_928, retro_ttru_938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_130 75.33 95.51
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2. retro_ecab_589 75.00 100.00
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Download FASTA sequences of all ENSECAG00000024257 retrocopies