RetrogeneDB ID: | retro_acar_197 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343634.1:169551..169876(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM3 | ||
Ensembl ID: | ENSACAG00000013718 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.88 % |
Parental protein coverage: | 71.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RSRGFGFITFANPEHASDAMRAMNGESVDGRQIRVDHAGKSSRGSRGGYFGGRGRGRGYSRGGGDRSYGG |
R.RGF..I.....EHA..AM..MNG....G..IRVDHA.KSS...R.GYFGGRG.G.GYS....D..YGG | |
Retrocopy | RDRGFSLIILTSHEHALNAMIVMNGGYIEGCHIRVDHAEKSSHRPRSGYFGGRGYGCGYSQSSRDKRYGG |
Parental | -RYDNRSGGYGGSRDYGRSQGGYNDRYSSGGSYRDNYDN |
....N.SGGY....DYG.SQ..YND.YSS..SYR.NYDN | |
Retrocopy | >ANENQSGGYCDFWDYGGSQEVYNDHYSSDVSYRNNYDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 930 .50 RPM |
SRP009831_brain | 0 .00 RPM | 221 .60 RPM |
SRP009831_dewlap | 0 .00 RPM | 508 .73 RPM |
SRP009831_embryo | 0 .03 RPM | 1829 .39 RPM |
SRP009831_heart | 0 .00 RPM | 332 .77 RPM |
SRP009831_liver | 0 .00 RPM | 516 .06 RPM |
SRP009831_lung | 0 .00 RPM | 436 .93 RPM |
SRP009831_ovary | 0 .04 RPM | 507 .43 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 205 .49 RPM |