Parental gene:

PDAP1, ENSECAG00000024426

Aliases:None
Description:PDGFA associated protein 1 [Source:HGNC Symbol;Acc:14634]
Organism:Horse (Equus caballus)
Coordinates:13:209224..216143(+)


>ENSECAG00000024426
ACTGCCAATCCTTGTGCAGGGAGAAAGGGAGGCCACAAAGGCCGGGCACGGCAGTACACGAGCCCCGAGGAGATCGACGC
ACAGCTCCAGGCTGAAAAGCAGAAAGCCAGGGAAGAAGAGGAGCAAGGAGAAGAAGGTGGAGATGGGGCTACAGGTGACC
CCAAAAAAGAGAAGAAATCTCTAGACTCAGAAGAGAGTGAGGATGAGGAAGATGATTACCAGCAAAAGCGCAAAGGCGTG
GAAGGGCTCATCGACATCGAGAACCCCAACCGGGTGGCACAGACAACCAAAAAGGTCACACAGCTGGACCTGGACGGGCC
CAAGGAGCTTTCAAGGAGAGAACGAGAAGAAATCGAGAAGCAGAAAGCGAAAGAGCGTTACATGAAAATGCATTTAGCTG
GGAAGACAGAGCAAGCCAAGGCTGACCTTGCCCGGCTGGCGATCATCCGGAAACAGCGGGAGGAGGCTGCTAGGAAGAAA
GAAGAAGAGAGGAAAGCGAAAGACGATGCGACTTTGTCAGGAAAACGGATGCAGTCGCTCTCCCTGAATAAGTAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 29 .24 RPM
SRP021940_embryo 56 .87 RPM
SRP021940_cerebellum 38 .59 RPM
SRP021940_testis 47 .45 RPM
SRP021940_placental_villous 30 .94 RPM
SRP021940_articular_cartilage 24 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015838 ortholog_one2one 2 retrogenes
retro_cjac_2676, retro_cjac_2725,
Echinops telfairi ENSETEG00000009926 ortholog_one2one 1 retrogene
retro_etel_900,
Felis catus ENSFCAG00000015067 ortholog_one2one 1 retrogene
retro_fcat_1227,
Homo sapiens ENSG00000106244 ortholog_one2one 3 retrogenes
retro_hsap_1061, retro_hsap_3210, retro_hsap_3506,
Gorilla gorilla ENSGGOG00000025196 ortholog_one2one 5 retrogenes
retro_ggor_1776, retro_ggor_1778, retro_ggor_2179, retro_ggor_2371, retro_ggor_837,
Macaca mulatta ENSMMUG00000001460 ortholog_one2one 2 retrogenes
retro_mmul_1865, retro_mmul_943,
Mus musculus ENSMUSG00000029623 ortholog_one2one 1 retrogene
retro_mmus_2581,
Nomascus leucogenys ENSNLEG00000011017 ortholog_one2one 1 retrogene
retro_nleu_1158,
Otolemur garnettii ENSOGAG00000010874 ortholog_one2many 2 retrogenes
retro_ogar_2199, retro_ogar_789,
Ochotona princeps ENSOPRG00000013615 ortholog_one2one 2 retrogenes
retro_opri_262, retro_opri_512,
Pongo abelii ENSPPYG00000017375 ortholog_one2one 4 retrogenes
retro_pabe_2659, retro_pabe_2806, retro_pabe_2901, retro_pabe_884,
Pan troglodytes ENSPTRG00000041711 ortholog_one2one 4 retrogenes
retro_ptro_1711, retro_ptro_2240, retro_ptro_2378, retro_ptro_722,
Ictidomys tridecemlineatus ENSSTOG00000001679 ortholog_one2one 1 retrogene
retro_itri_765,
Tupaia belangeri ENSTBEG00000010152 ortholog_one2one 5 retrogenes
retro_tbel_1365, retro_tbel_3543, retro_tbel_4066, retro_tbel_766, retro_tbel_975,
Tursiops truncatus ENSTTRG00000003004 ortholog_one2one 1 retrogene
retro_ttru_1343,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_449 62.50 58.15
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Download FASTA sequences of all ENSECAG00000024426 retrocopies