Parental gene:

Pdap1, ENSMUSG00000029623

Aliases:Pdap1, HASPP28, PAP, PAP1
Description:PDGFA associated protein 1 [Source:MGI Symbol;Acc:MGI:2448536]
Organism:Mouse (Mus musculus)
Coordinates:5:145128768..145140238(-)


>ENSMUSG00000029623
ATGCCTAAAGGAGGTAGAAAGGGAGGCCACAAAGGCCGAGTGAGGCAGTATACGAGCCCGGAGGAGATCGATGCCCAGCT
ACAGGCTGAGAAGCAGAAGGCCAACGAAGAAGATGAACAAGAAGAAGGTGGAGATGGGGCTTCAGGTGACCCAAAAAAGG
AAAAGAAATCTCTAGACTCAGATGAAAGTGAAGATGAAGATGATGACTACCAGCAAAAGCGAAAAGGCGTGGAGGGGCTC
ATTGACATTGAGAACCCCAACCGCGTGGCACAGACAACTAAGAAGGTCACGCAACTGGATCTGGACGGGCCAAAGGAGCT
TTCAAGGAGAGAAAGAGAAGAAATAGAGAAGCAAAAAGCAAAAGAACGCTACATGAAGATGCATTTGGCTGGGAAGACAG
AGCAGGCCAAGGCTGATCTCGCCCGGCTGGCAATCATCCGGAAACAGCGGGAGGAGGCAGCAAGAAAGAAAGAGGAAGAA
AGGAAAGCAAAAGATGACGCAACTTTGTCAGGAAAACGAATGCAGTCGCTGTCCCTGAATAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain 54 .18 RPM
SRP007412_cerebellum 54 .19 RPM
SRP007412_heart 42 .06 RPM
SRP007412_kidney 51 .26 RPM
SRP007412_liver 41 .24 RPM
SRP007412_testis 86 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015838 ortholog_one2one 2 retrogenes
retro_cjac_2676, retro_cjac_2725,
Equus caballus ENSECAG00000024426 ortholog_one2one 1 retrogene
retro_ecab_449,
Echinops telfairi ENSETEG00000009926 ortholog_one2one 1 retrogene
retro_etel_900,
Felis catus ENSFCAG00000015067 ortholog_one2one 1 retrogene
retro_fcat_1227,
Homo sapiens ENSG00000106244 ortholog_one2one 3 retrogenes
retro_hsap_1061, retro_hsap_3210, retro_hsap_3506,
Gorilla gorilla ENSGGOG00000025196 ortholog_one2one 5 retrogenes
retro_ggor_1776, retro_ggor_1778, retro_ggor_2179, retro_ggor_2371, retro_ggor_837,
Macaca mulatta ENSMMUG00000001460 ortholog_one2one 2 retrogenes
retro_mmul_1865, retro_mmul_943,
Nomascus leucogenys ENSNLEG00000011017 ortholog_one2one 1 retrogene
retro_nleu_1158,
Otolemur garnettii ENSOGAG00000010874 ortholog_one2many 2 retrogenes
retro_ogar_2199, retro_ogar_789,
Ochotona princeps ENSOPRG00000013615 ortholog_one2one 2 retrogenes
retro_opri_262, retro_opri_512,
Pongo abelii ENSPPYG00000017375 ortholog_one2one 4 retrogenes
retro_pabe_2659, retro_pabe_2806, retro_pabe_2901, retro_pabe_884,
Pan troglodytes ENSPTRG00000041711 ortholog_one2one 4 retrogenes
retro_ptro_1711, retro_ptro_2240, retro_ptro_2378, retro_ptro_722,
Ictidomys tridecemlineatus ENSSTOG00000001679 ortholog_one2one 1 retrogene
retro_itri_765,
Tupaia belangeri ENSTBEG00000010152 ortholog_one2one 5 retrogenes
retro_tbel_1365, retro_tbel_3543, retro_tbel_4066, retro_tbel_766, retro_tbel_975,
Tursiops truncatus ENSTTRG00000003004 ortholog_one2one 1 retrogene
retro_ttru_1343,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2581 50.93 58.56
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Download FASTA sequences of all ENSMUSG00000029623 retrocopies