Parental gene:

SMEK1, ENSEEUG00000006324

Aliases:None
Description:SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:20219]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_1416:6118..58125(-)


>ENSEEUG00000006324
TCTCTACTTTTAGAATCCAAAATAAATCCCAACACTGCATACCAGAAACAACAGGATACTTTGATTGTATGGTCTGAAGC
AGAAAATTATGACTTGGCCCTTAGCTTTCAGGAAAAAGCTGGATGCGATGAAATTTGGGAGAAAATATGTCAGGTTCAAG
GCAAGGACCCATCAGTGGACATCACTCAGGACCTTGTTGATGAATCTGAAGAGGAGCGTTTTGATGATATGTCATCACCA
GGTTTAGAATTGCCATCCTGTGAATTAAGTCGCCTAGAAGAAATTGCAGAACTTGTGGCATCATCTTTACCTTCCCCCCT
TCGTCGTGAAAAACTTGCACTAGCACTGGAAAATGAGGGTTATATTAAAAAGCTCCTGGAGCTTTTTCATGTGTGTGAGG
ATTTGGAAAATATTGAAGGACTACACCACTTATATGAAATTATCAAAGGCATCTTTCTCTTGAATCGAACTGCTCTTTTT
GAAGTTATGTTCTCCGAGGAATGTATAATGGACGTCATTGGATGCTTGGAATATGATCCTGCATTATCACAACCACGAAA
ACACAGGGAATTTCTAACAAAAACAGCTAAGTTTAAAGAAGTGATTCCCATATCAGATCCTGAGTTGAAGCAAAAAATTC
ATCAGACATACAGAGTTCAGTATATACAAGATATGGTTCTACCTACCCCTTCAGTTTTTGAAGAAAATATGTTATCTACA
CTTCATTCCTTTATTTTCTTCAATAAGGTAGAAATTGTTGGTATGTTACAGGAAGATGAAAAATTTCTGACAGATTTGTT
TGCACAACTAACAGATGAATCTACAGATGAAGAAAAAAGGCAAGAATTGGTTAACTTTTTAAAAGAATTTTGTGCATTTT
CCCAAACGCTACAACCTCAAAACAGAGATGCTTTCTTCAAGACTTTGTCAAACATGGGCATTTTACCAGCTTTAGAAGTC
ATCCTTGGCATGGATGATACACAGGTGCGAAGTGCTGCTACTGATATCTTCTCATACTTGGTCGAGTACAACCCTTCCAT
GGTGCGAGAGTTTGTCATGCAGGAGGCACAGCAGAATGATGATGATATTTTGCTCATCAACCTCATTATAGAACATATGA
TTTGTGATACAGACCCTGAGCTTGGAGGAGCAGTCCAACTGATGGGCCTGCTTCGAACTTTAGTTGATCCAGAGAACATG
CTAGCTACTGCCAATAAAACAGAAAAGACCGAGTTTCTGGGTTTCTTCTATAAGCACTGTATGCATGTCCTCACTGCTCC
TTTACTGGCAAATACCACAGAAGAAAAGCCTAGCAAAGATGATTTTCAGACTGCCCAGCTGTTGGCACTGGTATTGGAGT
TGTTGACATTCTGTGTGGAGCACCATACCTACCACATAAAGAACTACATCATTAATAAGGACATCCTCCGGAGAGTGCTA
GTTCTGATGGCTTCCAAGCATGCTTTCTTGGCATTATGTGCTCTTCGCTTTATGAGAAAGATTATTGGATTAAAAGATGA
GTTTTACAACCGCTACATAATGAAAAGTTTTTTGTTTGAACCAGTAGTCAAAGCATTTCTCAATAATGGATCCCGCTACA
ATCTGATGAACTCTGCCGTACTAGAGATGTTTGAATTTATTAGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGCGTTCCATTTTGAGGAATCATAGATACCGAAGAGATGCCAGAACAC
TAGAAGATGAAGAAGAGATGTGGTTTAACACAGATGAGGATGACATGGACGACGGGGAGGCTGTAGTGTCTCCATCTGAC
AAGTGTAAAAATGATGATGACATTATGGACCCTATAAGTAAATTCATGGAAAGAAAAAAA

Library Parental gene expression (RPM)
SRP017611_liver 28 .94 RPM
SRP017611_kidney 62 .83 RPM
SRP017611_brain 56 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000012467 ortholog_one2one 1 retrogene
retro_dord_714,
Pan troglodytes ENSPTRG00000006638 ortholog_one2many 1 retrogene
retro_ptro_124,
Pteropus vampyrus ENSPVAG00000015294 ortholog_one2one 1 retrogene
retro_pvam_1091,
Tupaia belangeri ENSTBEG00000008535 ortholog_one2one 1 retrogene
retro_tbel_2368,
Tarsius syrichta ENSTSYG00000010333 ortholog_one2one 1 retrogene
retro_tsyr_863,
Tursiops truncatus ENSTTRG00000013598 ortholog_one2one 1 retrogene
retro_ttru_1398,
Vicugna pacos ENSVPAG00000002765 ortholog_one2one 1 retrogene
retro_vpac_536,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_316 57.37 66.52
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Download FASTA sequences of all ENSEEUG00000006324 retrocopies