RetrogeneDB ID: | retro_eeur_316 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_251742:3936..5252(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMEK1 | ||
Ensembl ID: | ENSEEUG00000006324 | ||
Aliases: | None | ||
Description: | SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:20219] |
Percent Identity: | 57.37 % |
Parental protein coverage: | 66.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LLESKINPNTAYQKQQDTL-IVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEE |
.LESKIN..T.Y.K.Q....I.WSE.EN.D.ALSFQ..A.C.EIW..IC..QG....V.IT.D...ES.E | |
Retrocopy | ILESKINLRTHY-KEQQGT<IMWSESENQDMALSFQFEASCQEIWDDICHIQGTGSCVEITHDFLEESLE |
Parental | ERFDDM-SSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEG |
........S....LP.CEL..L..I..L..S.L.SP...E.LALALEN..YIK.LL.LFH.CED.....G | |
Retrocopy | QYPEVLETSTMVDLPNCELDKLQQISDLITSVLTSPILKERLALALENKDYIKSLLHLFHICEDRKDTKG |
Parental | LHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKTAKFKEVIPISDPELK |
L.HL.EIIKGI..LN.T.LFE.M.S...IMDV.GCLEYDP.L.QP..HREFLT...KFKEVIP..D..LK | |
Retrocopy | LGHLHEIIKGIMYLNKTTLFEIMLSDKYIMDVVGCLEYDPSLDQPKNHREFLTQNVKFKEVIPKTDCALK |
Parental | QKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDESTDEEKR |
.KIHQTYR.QYI.D...PT..VFE.N..STL..FIF.NKVEI...LQ.D..FL...F.QL.D..TD..K. | |
Retrocopy | RKIHQTYRMQYIHDILSPTSPVFEDNFISTLKTFIFYNKVEIICLLQDDDVFLSGIFTQLMDKTTDCNKL |
Parental | QELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVRE |
.E.V.F.KEFC.FSQTLQP.N.D..FKTL....ILPAL.......D.Q.RSA..DIF..LVEY.P.M.R. | |
Retrocopy | CEMVLFVKEFCSFSQTLQPHNKDRLFKTLTQLKILPALKSVMSVNDVQIRSASADIFGFLVEYSPCMIRR |
Parental | FVMQEAQQNDDDILLINLIIEHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHC |
FV...AQQ.....L.INL.I...I.DTDPELGGA.QL.GLLRTL.DPENM..T....E..EF..FFYKHC | |
Retrocopy | FVLEDAQQSKGSDLFINLVIDQIIRDTDPELGGAIQLTGLLRTLLDPENMQITPSRYERNEFQNFFYKHC |
Parental | MHVLTAPLLANTTEEKPSKDD |
.H.L.APLLA.TTE....KD. | |
Retrocopy | LHNLIAPLLATTTEDIYEKDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 62 .83 RPM |
SRP017611_liver | 0 .00 RPM | 28 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000012467 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006324 | 1 retrocopy |
retro_eeur_316 ,
|
Pan troglodytes | ENSPTRG00000006638 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015294 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008535 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010333 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013598 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000002765 | 1 retrocopy |