Parental gene:

SMEK1, ENSPTRG00000006638

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:14:90993974..91046368(-)


>ENSPTRG00000006638
ATGACCGACACCCGGCGGCGGGTGAAGGTGTACACGCTCAACGAGGACCGGCAGTGGGACGACCGGGGCACCGGGCATGT
GTCGTCTGGCTACGTGGAGCGGCTGAAGGGCATGTCCCTGCTTGTCAGGGCTGAGAGCGACGGTTCTCTACTTTTAGAGT
CCAAAATAAATCCTAACACCGCATACCAGAAACAACAGGACACTCTGATTGTGTGGTCTGAAGCAGAAAATTATGACTTG
GCCCTTAGCTTTCAAGAAAAAGCTGGATGTGATGAAATTTGGGAGAAAATATGTCAGGTTCAAGGAAAGGACCCTTCCGT
GGACATCACTCAGGACCTTGTGGATGAATCTGAAGAGGAGCGTTTTGATGATATGTCATCGCCAGGCTTAGAATTGCCAT
CTTGTGAATTAAGTCGCCTTGAAGAAATTGCAGAACTTGTGGCATCATCTTTACCTTCACCTCTTCGTCGTGAAAAACTT
GCACTGGCACTAGAAAATGAGGGTTATATTAAAAAGCTCCTGGAGCTTTTTCATGTGTGTGAAGATTTGGAAAATATTGA
AGGACTGCACCACTTGTATGAAATTATCAAAGGCATCTTTCTCTTGAATCGAACTGCTCTTTTTGAAGTTATGTTCTCTG
AAGAATGTATAATGGACGTCATTGGATGTTTAGAATATGATCCTGCTTTATCACAACCACGAAAACACAGGGAATTTCTA
ACAAAAACAGCCAAGTTTAAAGAAGTGATTCCCATATCAGATCCTGAGCTGAAACAAAAAATTCATCAGACATACAGAGT
TCAGTATATACAAGATATGGTTCTACCAACTCCTTCGGTCTTTGAAGAAAACATGTTATCAACACTTCACTCTTTTATCT
TTTTCAATAAGGTAGAGATCGTTGGCATGTTGCAGGAAGATGAAAAATTTCTGACAGATTTGTTTGCACAACTAACAGAT
GAAGCAACAGATGAGGAAAAAAGACAGGAATTGGTTAACTTTTTAAAAGAATTTTGTGCGTTTTCCCAAACGCTACAGCC
TCAAAACAGAGATGCTTTTTTCAAGACTTTGTCAAACATGGGCATATTACCAGCTTTAGAAGTCATCCTTGGCATGGATG
ATACACAGGTGCGAAGTGCTGCTACTGATATATTCTCATACTTGGTTGAATATAATCCATCCATGGTACGAGAGTTTGTC
ATGCAGGAGGCACAACAGAATGATGATGATATTTTGCTCATCAACCTCATTATAGAACATATGATTTGTGATACAGATCC
TGAACTTGGAGGAGCAGTCCAGCTTATGGGCCTGCTTCGAACTTTAGTTGACCCAGAGAACATGCTAGCCACTGCCAATA
AAACAGAAAAGACTGAATTTCTGGGTTTCTTCTACAAGCACTGTATGCATGTTCTCACTGCTCCTTTACTAGCAAATACA
ACAGAAGACAAACCTAGTAAAGATGATTTTCAGACTGCCCAACTATTGGCACTTGTATTGGAATTGTTAACATTTTGTGT
GGAGCACCATACCTACCACATAAAGAACTACATTATTAATAAGGATATCCTCCGGAGAGTGCTAGTTCTTATGGCCTCGA
AGCATGCTTTCTTGGCATTGTGTGCCCTTCGTTTTAAAAGAAAGATTATTGGATTAAAAGATGAGTTTTACAACCGCTAC
ATAATGAAAAGTTTTTTGTTTGAACCAGTAGTGAAAGCATTTCTCAACAATGGATCCCGCTACAATCTGATGAACTCTGC
CATAATAGAGATGTTTGAATTTATTAGAGTGGAAGATATAAAATCATTAACTGCTCATGTAATTGAAAATTACTGGAAAG
CACTGGAAGATGTAGATTATGTACAGACATTTAAAGGATTAAAACTGAGATTTGAACAACAAAGAGAAAGGCAAGATAAT
CCCAAACTCGACAGTATGCGTTCCATTTTGAGGAATCACAGATATCGAAGAGATGCCAGAACACTAGAAGATGAAGAAGA
GATGTGGTTTAACACAGATGAAGATGACATGGAAGATGGAGAAGCTGTAGTGTCTCCATCTGACAAAACTAAAAATGATG
ATGATATTATGGATCCAATAAGTAAATTCATGGAAAGGAAGAAATTAAAAGAAAGTGAGGAAAAGGAAGTGCTTCTGAAA
ACAAATCTTTCTGGACGGCAGAGCCCAAGTTTCAAGCTTTCCCTGTCCAGTGGAACGAAGACTAACCTCACCAGCCAGTC
ATCTACAACAAATCTGCCTGGTTCTCCGGGATCACCTGGATCCCCAGGATCTCCAGGCTCTCCTGGATCCGTACCTAAAA
ATACGTCTCAGACGGCAGCTATTACTACAAAGGGAGGCCTCGTGGGTCTGGTAGATTATCCTGATGATGATGAAGATGAT
GATGAGGATGAAGATAAGGAAGATACGTTACCATTGTCAAAGAAAGCAAAATTTGATTCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .31 RPM
SRP007412_cerebellum 11 .97 RPM
SRP007412_heart 5 .51 RPM
SRP007412_kidney 11 .45 RPM
SRP007412_liver 7 .40 RPM
SRP007412_testis 35 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000012467 ortholog_one2many 1 retrogene
retro_dord_714,
Erinaceus europaeus ENSEEUG00000006324 ortholog_one2many 1 retrogene
retro_eeur_316,
Pan troglodytes ENSPTRG00000011933 within_species_paralog 1 retrogene
retro_ptro_3191,
Pteropus vampyrus ENSPVAG00000015294 ortholog_one2many 1 retrogene
retro_pvam_1091,
Tupaia belangeri ENSTBEG00000008535 ortholog_one2many 1 retrogene
retro_tbel_2368,
Tarsius syrichta ENSTSYG00000010333 ortholog_one2many 1 retrogene
retro_tsyr_863,
Tursiops truncatus ENSTTRG00000013598 ortholog_one2many 1 retrogene
retro_ttru_1398,
Vicugna pacos ENSVPAG00000002765 ortholog_one2many 1 retrogene
retro_vpac_536,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_124 99.39 100.00
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Download FASTA sequences of all ENSPTRG00000006638 retrocopies