Parental gene: | CCDC86, ENSG00000110104 |
| Aliases: | None |
| Description: | coiled-coil domain containing 86 [Source:HGNC Symbol;Acc:28359] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 11:60609543..60618554(+) |
>ENSG00000110104
ATGGATACACCGTTAAGGCGCAGCCGACGGCTGGGAGGCCTAAGGCCCGAATCCCCCGAGAGCCTCACCTCAGTTTCGCG
GACGAGACGGGCCCTTGTGGAGTTCGAGTCGAACCCAGAAGAAACGAGGGAGCCCGGGTCTCCTCCGAGTGTGCAGCGGG
CTGGCCTGGGGTCCCCCGAAAGGCCGCCGAAGACAAGCCCAGGATCACCCCGTCTGCAGCAGGGTGCAGGCTTGGAGTCA
CCCCAAGGGCAGCCAGAGCCAGGCGCAGCGTCCCCCCAGCGTCAGCAAGACCTACACCTGGAGTCGCCTCAAAGACAGCC
AGAGTACAGTCCTGAATCCCCACGATGTCAGCCGAAGCCAAGTGAGGAGGCACCAAAGTGTTCTCAGGACCAGGGAGTAC
TGGCCTCGGAGTTGGCCCAGAATAAGGAGGAGCTGACCCCGGGGGCCCCCCAGCATCAGCTACCGCCGGTCCCAGGATCA
CCAGAGCCTTACCCCGGTCAGCAAGCTCCCGGTCCGGAGCCCTCTCAGCCACTACTGGAGCTGACACCCAGGGCACCTGG
CTCCCCCCGGGGTCAGCATGAGCCGAGCAAGCCACCTCCAGCTGGGGAGACGGTGACAGGCGGCTTCGGGGCAAAGAAGC
GAAAAGGTTCTTCATCCCAGGCCCCAGCGTCCAAGAAGTTGAATAAAGAGGAGCTTCCTGTAATCCCGAAGGGGAAGCCC
AAATCGGGGCGAGTGTGGAAGGACCGCTCCAAGAAAAGATTCTCCCAGATGCTTCAGGACAAGCCCCTGCGCACATCGTG
GCAGCGGAAGATGAAGGAACGACAGGAGAGGAAGCTGGCCAAGGACTTTGCCCGTCACCTGGAGGAGGAGAAGGAGAGGC
GCCGCCAGGAGAAGAAACAGCGCCGGGCTGAGAACCTGAAACGCCGCCTGGAGAATGAGCGGAAGGCAGAGGTCGTCCAA
GTGATCCGAAACCCCGCCAAGCTCAAGCGGGCAAAGAAGAAGCAGCTGCGCTCCATTGAGAAGCGGGACACCCTGGCCCT
GCTGCAGAAGCAGCCGCCCCAGCAGCCGGCAGCCAAGATCTGA
ATGGATACACCGTTAAGGCGCAGCCGACGGCTGGGAGGCCTAAGGCCCGAATCCCCCGAGAGCCTCACCTCAGTTTCGCG
GACGAGACGGGCCCTTGTGGAGTTCGAGTCGAACCCAGAAGAAACGAGGGAGCCCGGGTCTCCTCCGAGTGTGCAGCGGG
CTGGCCTGGGGTCCCCCGAAAGGCCGCCGAAGACAAGCCCAGGATCACCCCGTCTGCAGCAGGGTGCAGGCTTGGAGTCA
CCCCAAGGGCAGCCAGAGCCAGGCGCAGCGTCCCCCCAGCGTCAGCAAGACCTACACCTGGAGTCGCCTCAAAGACAGCC
AGAGTACAGTCCTGAATCCCCACGATGTCAGCCGAAGCCAAGTGAGGAGGCACCAAAGTGTTCTCAGGACCAGGGAGTAC
TGGCCTCGGAGTTGGCCCAGAATAAGGAGGAGCTGACCCCGGGGGCCCCCCAGCATCAGCTACCGCCGGTCCCAGGATCA
CCAGAGCCTTACCCCGGTCAGCAAGCTCCCGGTCCGGAGCCCTCTCAGCCACTACTGGAGCTGACACCCAGGGCACCTGG
CTCCCCCCGGGGTCAGCATGAGCCGAGCAAGCCACCTCCAGCTGGGGAGACGGTGACAGGCGGCTTCGGGGCAAAGAAGC
GAAAAGGTTCTTCATCCCAGGCCCCAGCGTCCAAGAAGTTGAATAAAGAGGAGCTTCCTGTAATCCCGAAGGGGAAGCCC
AAATCGGGGCGAGTGTGGAAGGACCGCTCCAAGAAAAGATTCTCCCAGATGCTTCAGGACAAGCCCCTGCGCACATCGTG
GCAGCGGAAGATGAAGGAACGACAGGAGAGGAAGCTGGCCAAGGACTTTGCCCGTCACCTGGAGGAGGAGAAGGAGAGGC
GCCGCCAGGAGAAGAAACAGCGCCGGGCTGAGAACCTGAAACGCCGCCTGGAGAATGAGCGGAAGGCAGAGGTCGTCCAA
GTGATCCGAAACCCCGCCAAGCTCAAGCGGGCAAAGAAGAAGCAGCTGCGCTCCATTGAGAAGCGGGACACCCTGGCCCT
GCTGCAGAAGCAGCCGCCCCAGCAGCCGGCAGCCAAGATCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 5 .30 RPM |
| bodymap2_lung | 6 .01 RPM |
| bodymap2_breast | 9 .14 RPM |
| bodymap2_adipose | 17 .13 RPM |
| bodymap2_adrenal | 15 .56 RPM |
| bodymap2_skeletal_muscle | 11 .17 RPM |
| bodymap2_thyroid | 16 .36 RPM |
| bodymap2_prostate | 7 .22 RPM |
| bodymap2_colon | 7 .83 RPM |
| bodymap2_testis | 34 .39 RPM |
| bodymap2_brain | 7 .17 RPM |
| bodymap2_heart | 3 .69 RPM |
| bodymap2_white_blood_cells | 5 .20 RPM |
| bodymap2_lymph_node | 7 .77 RPM |
| bodymap2_ovary | 15 .88 RPM |
| bodymap2_kidney | 7 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000013670 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000000019 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000013582 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003205 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000003721 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_3276 | 67.61 | 57.50 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_3834 | 80.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000110104 retrocopies