Parental gene:

SSX2IP, ENSG00000117155

Aliases:SSX2IP, ADIP
Description:synovial sarcoma, X breakpoint 2 interacting protein [Source:HGNC Symbol;Acc:16509]
Organism:Human (Homo sapiens)
Coordinates:1:85109389..85156486(-)


>ENSG00000117155
ATGGGAGATTGGATGACTGTTACAGATCCAGGTCTGTCTTCAGAAAGCAAAACTATCTCTCAATATACCTCAGAAACAAA
GATGTCTCCATCAAGTTTATACTCACAGCAAGTGCTATGTTCTTCAATACCTTTATCGAAAAATGTGCACAGTTTTTTCA
GTGCCTTCTGCACAGAAGATAATATTGAACAGAGTATCTCATATCTTGATCAGGAATTGACTACTTTTGGTTTTCCTTCA
TTATATGAAGAATCCAAAGGTAAAGAGACAAAGAGAGAGTTAAATATAGTAGCTGTACTAAATTGTATGAATGAGCTGCT
TGTGCTTCAGCGGAAGAACCTTCTAGCTCAGGAAAATGTGGAGACACAGAATTTGAAGCTGGGAAGTGATATGGACCATC
TACAGAGCTGCTACTCAAAACTTAAGGAACAACTGGAAACCTCCAGGAGGGAAATGATTGGGCTTCAGGAAAGAGACAGA
CAGTTACAATGTAAGAACAGGAATTTGCATCAGCTACTAAAGAATGAGAAAGATGAGGTGCAAAAATTACAAAATATCAT
TGCAAGTCGAGCTACTCAGTATAATCATGATATGAAGAGAAAAGAGCGTGAATATAATAAACTGAAGGAACGTCTACATC
AACTTGTTATGAACAAGAAAGATAAGAAAATAGCTATGGACATTTTGAATTATGTCGGGAGAGCTGATGGAAAAAGAGGC
TCCTGGAGGACTGGTAAAACTGAAGCCAGGAATGAAGATGAAATGTATAAAATTCTCTTGAATGATTATGAATATCGTCA
GAAACAAATCCTAATGGAAAATGCAGAACTTAAGAAGGTTCTTCAACAAATGAAAAAGGAAATGATTTCTCTTCTTTCTC
CCCAAAAGAAGAAACCTAGAGAAAGAGTAGATGATAGTACAGGAACTGTTATTTCCGATGTTGAAGAAGATGCCGGGGAA
CTAAGCAGAGAGAGTATGTGGGACCTTTCCTGTGAAACTGTGAGAGAGCAGCTTACAAACAGCATCAGAAAACAGTGGAG
AATTTTGAAAAGTCATGTAGAAAAGCTTGATAACCAAGTTTCAAAGGTACACCTGGAAGGTTTTAATGATGAAGATGTAA
TCTCACGACAAGACCATGAACAAGAAACTGAAAAACTCGAGTTAGAAATTCAGCAGTGTAAAGAAATGATTAAAACTCAG
CAACAGCTTTTACAGCAGCAGCTCGCTACTGCATATGATGATGATACCACTTCACTATTACGAGACTGTTATTTGTTGGA
AGAAAAGGAACGTCTCAAAGAAGAATGGTCCCTTTTTAAAGAGCAGAAAAAGAATTTTGAGAGGGAGAGACGAAGCTTTA
CAGAAGCCGCTATTCGCCTGGGATTGGAGAGAAAGGCATTTGAAGAAGAAAGAGCCAGTTGGTTAAAGCAGCAGTTTCTA
AATATGACTACCTTTGACCACCAGAACTCAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAAGTTCTGATTGGGACAA
TCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGTGTGTCTAATGGGTCTCCAGTTTGCATGTCTAAACTTA
CTAAATCTCTTCCTGCTTCACCTTCCACTTCAGACTTTTGCCAGACACGTTCCTGCATATCTGAACATAGTTCAATCAAT
GTACTGAATATAACTGCTGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATGTACAAATCAAAAATGGAGTGTGGCATC
AAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAGAAAAAGATGACTTAC
CTTAG

Library Parental gene expression (RPM)
bodymap2_liver 14 .11 RPM
bodymap2_lung 8 .95 RPM
bodymap2_breast 6 .83 RPM
bodymap2_adipose 3 .94 RPM
bodymap2_adrenal 10 .32 RPM
bodymap2_skeletal_muscle 9 .29 RPM
bodymap2_thyroid 22 .15 RPM
bodymap2_prostate 20 .99 RPM
bodymap2_colon 40 .78 RPM
bodymap2_testis 205 .08 RPM
bodymap2_brain 138 .98 RPM
bodymap2_heart 16 .04 RPM
bodymap2_white_blood_cells 22 .48 RPM
bodymap2_lymph_node 7 .13 RPM
bodymap2_ovary 16 .83 RPM
bodymap2_kidney 48 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Pongo abelii ENSPPYG00000001201 ortholog_one2one 1 retrogene
retro_pabe_2206,
Pan troglodytes ENSPTRG00000000906 ortholog_one2one 1 retrogene
retro_ptro_1913,
Tarsius syrichta ENSTSYG00000004276 ortholog_one2one 1 retrogene
retro_tsyr_526,
Tursiops truncatus ENSTTRG00000008402 ortholog_one2one 1 retrogene
retro_ttru_1078,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2822 75.16 50.16
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Download FASTA sequences of all ENSG00000117155 retrocopies