Parental gene:

SRSF6, ENSG00000124193

Aliases:SRSF6, B52, HEL-S-91, SFRS6, SRP55
Description:serine/arginine-rich splicing factor 6 [Source:HGNC Symbol;Acc:10788]
Organism:Human (Homo sapiens)
Coordinates:20:42086567..42092245(+)


>ENSG00000124193
ATGCCGCGCGTCTACATAGGACGCCTGAGCTACAACGTCCGGGAGAAGGACATCCAGCGCTTTTTCAGTGGCTATGGCCG
CCTCCTCGAAGTAGACCTCAAAAATGGGTACGGCTTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCGTTTACG
AGCTGAACGGCAAGGAGCTCTGCGGCGAGCGCGTGATCGTAGAGCACGCCCGGGGCCCGCGTCGCGATCGCGACGGCTAC
AGCTACGGAAGCCGCAGTGGTGGAGGTGGATACAGCAGTCGGAGAACATCTGGCAGAGACAAATACGGACCACCTGTTCG
TACAGAATACAGGCTTATTGTAGAAAATCTTTCTAGTCGGTGCAGTTGGCAAGATTTAAAGGATTTTATGCGACAAGCAG
GTGAAGTAACCTATGCGGATGCCCACAAGGAACGAACAAATGAGGGTGTAATTGAGTTTCGCTCCTACTCTGACATGAAG
CGTGCTTTGGACAAACTGGATGGCACAGAAATAAATGGCAGAAATATTAGGCTTATTGAAGATAAGCCACGCACAAGCCA
TAGGCGATCTTACTCTGGAAGCAGATCCAGGTCTCGATCTAGAAGACGGTCACGAAGTAGGAGTCGCAGGAGCAGCCGCA
GTAGATCTCGAAGTATCTCAAAAAGTCGCTCCCGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCGATCAAAAGGC
AGGAAATCTAGATCAAAGAGCAAATCTAAGCCCAAGTCTGATCGGGGCTCCCATTCACATTCTCGAAGCAGATCTAAGGA
TGAGTATGAGAAATCTCGAAGCAGGTCTCGGTCCCGATCCCCTAAAGAAAATGGAAAGGGTGATATAAAGTCAAAATCCA
GATCAAGGAGCCAGTCCCGTTCCAATTCGCCGCTACCTGTTCCACCCTCAAAGGCCCGTTCTGTGTCCCCTCCACCAAAA
AGAGCTACTTCAAGATCCCGTTCTAGATCTCGCTCAAAGTCAAGATCAAGGTCCAGGTCGAGTTCCAGAGATTAA

Library Parental gene expression (RPM)
bodymap2_liver 106 .36 RPM
bodymap2_lung 58 .03 RPM
bodymap2_breast 111 .09 RPM
bodymap2_adipose 44 .55 RPM
bodymap2_adrenal 203 .61 RPM
bodymap2_skeletal_muscle 24 .28 RPM
bodymap2_thyroid 227 .56 RPM
bodymap2_prostate 162 .27 RPM
bodymap2_colon 40 .59 RPM
bodymap2_testis 119 .32 RPM
bodymap2_brain 83 .28 RPM
bodymap2_heart 63 .88 RPM
bodymap2_white_blood_cells 127 .14 RPM
bodymap2_lymph_node 151 .87 RPM
bodymap2_ovary 224 .54 RPM
bodymap2_kidney 170 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002061 ortholog_one2one 1 retrogene
retro_acar_191,
Echinops telfairi ENSETEG00000006221 ortholog_one2one 1 retrogene
retro_etel_1261,
Homo sapiens ENSG00000111786 within_species_paralog 1 retrogene
retro_hsap_2530,
Homo sapiens ENSG00000112081 other_paralog 4 retrogenes
retro_hsap_2140, retro_hsap_2299, retro_hsap_2304, retro_hsap_757,
Gorilla gorilla ENSGGOG00000009808 ortholog_one2one 1 retrogene
retro_ggor_2176,
Monodelphis domestica ENSMODG00000003107 ortholog_one2one 1 retrogene
retro_mdom_697,
Nomascus leucogenys ENSNLEG00000006524 ortholog_one2one 1 retrogene
retro_nleu_1294,
Oryctolagus cuniculus ENSOCUG00000009785 possible_ortholog 1 retrogene
retro_ocun_312,
Pongo abelii ENSPPYG00000011019 ortholog_one2one 1 retrogene
retro_pabe_1483,
Pan troglodytes ENSPTRG00000013506 ortholog_one2one 1 retrogene
retro_ptro_3057,
Rattus norvegicus ENSRNOG00000006380 ortholog_one2many 1 retrogene
retro_rnor_1752,
Tursiops truncatus ENSTTRG00000015410 ortholog_one2one 2 retrogenes
retro_ttru_1786, retro_ttru_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1809 92.75 100.00
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Download FASTA sequences of all ENSG00000124193 retrocopies