Parental gene:

SRSF6, ENSOCUG00000009785

Aliases:None
Description:Serine/arginine-rich splicing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:O18776]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018718:2892225..2897177(+)


>ENSOCUG00000009785
ATGCCGCGCGTCTACATAGGACGCCTGAGCTACAACGTCCGGGAGAAGGACATACAGCGCTTTTTCAGTGGCTATGGCCG
ACTCCTCGAAGTAGACCTAAAAAACGGCCTTGGGCTTGGTGCGGTCGCGGAAAATTGGTGGGGGCAAAGAAAATGCGATT
CTAACGTGGTACTTTACCACAAACTAAATCTAAAGAAGCTTTATGCTGCATTTGAACTGCCGGGGCATGTTATTGGGAGG
ACGGGTGGGGGTGGTTATTTTAAATGTGATAAAGGTGGTGGTGGTGGATACAGCAGTCGGAGAACCTCTGGCAGAGACAA
ATATGGACCACCTGTTCGTACAGAGTACAGGCTAATTGTAGAAAATCTTTCTAGTCGGTGCAGTTGGCAAGATTTAAAGG
ATTTCATGCGCCAAGCAGGTGAAGTAACCTATGCGGATGCTCACAAAGAACGCACAAATGAAGGTGTAATTGAATTTCGC
TCCTACTCGGACATGAAGCGTGCTTTGGATAAACTGGATGGTACAGAAATAAATGGCAGAAATATTAGGCTTATTGAAGA
TAAGCCACGAACAAGCCATAGGCGATCTTACTCTGGAAGCAGATCTAGGTCACGTTCTAGAAGAAGGTCACGAAGTAGGA
GTCGCAGGAGCAGCCGCAGTAGATCTCGAAGTATTTCTAAAAGTCGCTCCCGATCCAGGTCGCGGAGCAAAGGTCGATCA
CGTTCTCGATCAAAAGGCAGGAAATCTAGATCGAAGAGCAAATCCAAACCCAAGTCTGATCGGGGCTCTCGGTCACGTTC
TCGAAGCAGATCTAAGGATGAGTATGAGAAATCCCGAAGCAGGTCTCGGTCTCGCTCTCGGTCCCCCAAAGAAAATGGAA
AAGGGAAAGAACCTAAAAGCTTTTGA

Library Parental gene expression (RPM)
SRP017611_liver 52 .95 RPM
SRP017611_kidney 102 .57 RPM
SRP017611_brain 89 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002061 ortholog_one2many 1 retrogene
retro_acar_191,
Canis familiaris ENSCAFG00000009289 possible_ortholog 1 retrogene
retro_cfam_392,
Echinops telfairi ENSETEG00000006221 possible_ortholog 1 retrogene
retro_etel_1261,
Homo sapiens ENSG00000124193 possible_ortholog 1 retrogene
retro_hsap_1809,
Gorilla gorilla ENSGGOG00000009808 possible_ortholog 1 retrogene
retro_ggor_2176,
Monodelphis domestica ENSMODG00000003107 ortholog_one2many 1 retrogene
retro_mdom_697,
Nomascus leucogenys ENSNLEG00000006524 possible_ortholog 1 retrogene
retro_nleu_1294,
Oryctolagus cuniculus ENSOCUG00000006684 other_paralog 3 retrogenes
retro_ocun_415, retro_ocun_772, retro_ocun_970,
Pongo abelii ENSPPYG00000011019 possible_ortholog 1 retrogene
retro_pabe_1483,
Pan troglodytes ENSPTRG00000013506 possible_ortholog 1 retrogene
retro_ptro_3057,
Rattus norvegicus ENSRNOG00000006380 ortholog_many2many 1 retrogene
retro_rnor_1752,
Tupaia belangeri ENSTBEG00000013448 possible_ortholog 1 retrogene
retro_tbel_383,
Tursiops truncatus ENSTTRG00000015410 possible_ortholog 2 retrogenes
retro_ttru_1786, retro_ttru_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_312 57.00 68.11
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Download FASTA sequences of all ENSOCUG00000009785 retrocopies