RetrogeneDB ID: | retro_acar_191 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343430.1:304784..305366(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF6 | ||
Ensembl ID: | ENSACAG00000002061 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 6 [Source:HGNC Symbol;Acc:10788] |
Percent Identity: | 68.34 % |
Parental protein coverage: | 57.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPRVYIGRLSYHVREKDLQRFFSGYGRLLEVDLKNGYGFVEFEDSRDAEDAVYELNGKDLCGERVIVEHA |
MP.VYIG.LS..........F..GYG...EVDLKNGYGF.EF.D..DA.DAV.ELNGKDLCG..VIVEH. | |
Retrocopy | MPHVYIGHLSNQAHKRNMEPF-KGYGKIVEVDLKNGYGFLEFGDVCDADDAVHELNGKDLCGDHVIVEHT |
Parental | RGPRRDRDGYSYSSRSGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAH |
.GPR.D....SYSS...GY..RR.SGRDK.GPP..TEYRLI.ENL...C.WQDLKD.M.QAGEVTYADAH | |
Retrocopy | WGPRCDS---SYSSGRSGYGYRR-SGRDKNGPPTHTEYRLIDENLTGCCNWQDLKDYMHQAGEVTYADAH |
Parental | KERTNEGVIEFRSYSDMKRALDKLDGTEINGRKIRLVEDKPRSSHRRSYSGSRSRSRSR |
..R.NEGVIEF.SYSDMKRAL..LDGTE.NGRK.RLVED.P.S..RRSYS.SR..SRSR | |
Retrocopy | NGRKNEGVIEFKSYSDMKRALENLDGTEVNGRKVRLVEDMPESRRRRSYSRSRTHSRSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .49 RPM | 164 .83 RPM |
SRP009831_brain | 0 .66 RPM | 116 .36 RPM |
SRP009831_dewlap | 0 .72 RPM | 91 .80 RPM |
SRP009831_embryo | 3 .20 RPM | 394 .01 RPM |
SRP009831_heart | 0 .52 RPM | 109 .83 RPM |
SRP009831_liver | 0 .12 RPM | 65 .73 RPM |
SRP009831_lung | 0 .25 RPM | 137 .27 RPM |
SRP009831_ovary | 1 .54 RPM | 69 .88 RPM |
SRP009831_skeletal_muscle | 0 .22 RPM | 34 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002061 | 1 retrocopy |
retro_acar_191 ,
|
Canis familiaris | ENSCAFG00000009289 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006221 | 1 retrocopy | |
Homo sapiens | ENSG00000124193 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009808 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003107 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006524 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009785 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011019 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013506 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006380 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013448 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015410 | 2 retrocopies |