Parental gene:

TAF5L, ENSG00000135801

Aliases:TAF5L, PAF65B
Description:TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa [Source:HGNC Symbol;Acc:17304]
Organism:Human (Homo sapiens)
Coordinates:1:229728857..229761794(-)


>ENSG00000135801
ATGAAACGAGTGCGTACCGAGCAGATTCAGATGGCAGTGTCCTGCTACCTCAAACGCCGGCAGTACGTGGACTCAGATGG
TCCCCTGAAGCAAGGACTGCGGCTGTCACAGACTGCTGAAGAGATGGCGGCCAATCTAACAGTGCAATCAGAATCTGGTT
GTGCCAACATAGTGTCTGCAGCCCCTTGCCAGGCAGAACCCCAGCAATATGAAGTACAGTTTGGACGACTGCGGAATTTT
CTCACTGATTCTGATTCCCAGCATAGCCACGAAGTGATGCCTCTCCTCTATCCTCTCTTTGTCTACCTCCATCTCAACCT
GGTCCAAAACAGTCCGAAGAGCACAGTGGAAAGTTTTTACAGCCGCTTCCATGGAATGTTTCTGCAGAATGCTAGCCAGA
AGGATGTCATTGAGCAGCTACAGACCACTCAAACCATCCAGGACATCCTATCTAACTTCAAGCTTCGAGCATTCCTAGAT
AACAAGTACGTGGTCCGTCTCCAAGAAGACAGCTACAACTACCTTATCCGCTACCTCCAAAGTGACAACAATACTGCCCT
GTGCAAAGTCCTCACCTTACATATTCATCTTGACGTGCAGCCTGCCAAGAGAACAGACTATCAGCTGTATGCCAGTGGCA
GCTCCTCCCGCAGTGAGAACAACGGTTTGGAGCCCCCCGACATGCCCAGCCCTATTCTGCAGAACGAGGCTGCCCTAGAG
GTCTTACAGGAGAGCATTAAGCGAGTCAAGGATGGGCCTCCCTCCCTCACTACCATCTGCTTCTATGCCTTCTATAACAC
AGAGCAGCTGTTGAACACTGCAGAAATCTCCCCCGATAGCAAGCTGCTTGCTGCTGGGTTTGACAACTCCTGTATAAAAC
TTTGGAGTTTACGATCCAAGAAGTTAAAATCAGAGCCCCACCAAGTAGACGTGTCCCGCATCCATTTGGCTTGTGATATT
CTGGAGGAGGAGGATGATGAGGATGATAATGCAGGCACGGAGATGAAGATACTGCGGGGCCACTGCGGACCAGTGTACAG
CACGAGGTTCCTCGCGGACAGCTCAGGGTTGCTCTCTTGTTCTGAAGACATGTCCATCAGATACTGGGATCTGGGGAGTT
TCACCAACACTGTGTTGTACCAAGGACATGCCTATCCTGTGTGGGATCTGGACATCAGTCCATATAGCCTGTACTTCGCC
AGCGGGTCCCACGACCGCACCGCCAGGCTGTGGTCATTTGATCGGACGTACCCGCTGAGGATATATGCAGGACACCTGGC
AGATGTGGACTGTGTCAAATTCCACCCTAATTCAAACTACTTGGCCACGGGCTCAACCGACAAGACCGTCCGGCTGTGGA
GCGCTCAGCAGGGGAACTCGGTGAGGCTTTTCACAGGCCACCGTGGCCCCGTGCTTTCTCTCGCCTTTTCTCCCAACGGT
AAGTACTTGGCGTCTGCTGGCGAGGACCAGCGGTTGAAGCTGTGGGACTTGGCCTCTGGGACCCTTTATAAAGAGTTGAG
AGGCCACACAGACAATATCACCAGCCTCACCTTCAGTCCAGACAGCGGCTTGATTGCCTCTGCCTCCATGGACAACTCGG
TGCGCGTCTGGGACATCAGGAACACTTACTGCAGTGCACCTGCCGACGGCTCCTCCAGCGAGCTCGTGGGCGTGTACACC
GGGCAGATGAGCAACGTCCTGAGCGTGCAGTTCATGGCCTGTAACCTTCTTCTGGTGACTGGAATTACACAAGAAAATCA
GGAACATTAA

Library Parental gene expression (RPM)
bodymap2_liver 13 .43 RPM
bodymap2_lung 14 .93 RPM
bodymap2_breast 19 .88 RPM
bodymap2_adipose 21 .39 RPM
bodymap2_adrenal 31 .65 RPM
bodymap2_skeletal_muscle 10 .31 RPM
bodymap2_thyroid 23 .80 RPM
bodymap2_prostate 31 .40 RPM
bodymap2_colon 15 .24 RPM
bodymap2_testis 19 .10 RPM
bodymap2_brain 18 .17 RPM
bodymap2_heart 14 .93 RPM
bodymap2_white_blood_cells 30 .95 RPM
bodymap2_lymph_node 21 .40 RPM
bodymap2_ovary 21 .28 RPM
bodymap2_kidney 13 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034225 ortholog_one2one 1 retrogene
retro_btau_1300,
Callithrix jacchus ENSCJAG00000010986 ortholog_one2one 1 retrogene
retro_cjac_4042,
Gorilla gorilla ENSGGOG00000028544 ortholog_one2one 1 retrogene
retro_ggor_2253,
Pan troglodytes ENSPTRG00000002091 ortholog_one2one 1 retrogene
retro_ptro_1216,
Rattus norvegicus ENSRNOG00000018027 possible_ortholog 1 retrogene
retro_rnor_509,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1750 86.46 100.00
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Download FASTA sequences of all ENSG00000135801 retrocopies