Parental gene:

RAB1A, ENSG00000138069

Aliases:RAB1A, RAB1, YPT1
Description:RAB1A, member RAS oncogene family [Source:HGNC Symbol;Acc:9758]
Organism:Human (Homo sapiens)
Coordinates:2:65297834..65357240(-)


>ENSG00000138069
ATGTCCAGCATGAATCCCGAATATGATTATTTATTCAAGTTACTTCTGATTGGCGACTCAGGGGTTGGAAAGTCTTGCCT
TCTTCTTAGGTTTGCAGATGATACATATACAGAAAGCTACATCAGCACAATTGGTGTGGATTTCAAAATAAGAACTATAG
AGTTAGACGGGAAAACAATCAAGCTTCAAATATGGGACACAGCAGGCCAGGAAAGATTTCGAACAATCACCTCCAGTTAT
TACAGAGGAGCCCATGGCATCATAGTTGTGTATGATGTGACAGATCAGGAGTCCTTCAATAATGTTAAACAGTGGCTGCA
GGAAATAGATCGTTATGCCAGTGAAAATGTCAACAAATTGTTGGTAGGGAACAAATGTGATCTGACCACAAAGAAAGTAG
TAGACTACACAACAGCGAAGGAATTTGCTGATTCCCTTGGAATTCCGTTTTTGGAAACCAGTGCTAAGAATGCAACGAAT
GTAGAACAGTCTTTCATGACGATGGCAGCTGAGATTAAAAAGCGAATGGGTCCCGGAGCAACAGCTGGTGGTGCTGAGAA
GTCCAATGTTAAAATTCAGAGCACTCCAGTCAAGCAGTCAGGTGGAGGTTGCTGCTAA

Library Parental gene expression (RPM)
bodymap2_liver 140 .41 RPM
bodymap2_lung 207 .52 RPM
bodymap2_breast 170 .24 RPM
bodymap2_adipose 155 .62 RPM
bodymap2_adrenal 128 .40 RPM
bodymap2_skeletal_muscle 50 .18 RPM
bodymap2_thyroid 197 .88 RPM
bodymap2_prostate 156 .00 RPM
bodymap2_colon 165 .26 RPM
bodymap2_testis 163 .53 RPM
bodymap2_brain 148 .66 RPM
bodymap2_heart 104 .88 RPM
bodymap2_white_blood_cells 112 .56 RPM
bodymap2_lymph_node 132 .43 RPM
bodymap2_ovary 169 .58 RPM
bodymap2_kidney 245 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000002205 ortholog_one2one 2 retrogenes
retro_etel_1687, retro_etel_413,
Homo sapiens ENSG00000143545 other_paralog 1 retrogene
retro_hsap_1122,
Homo sapiens ENSG00000174903 within_species_paralog 1 retrogene
retro_hsap_4252,
Macaca mulatta ENSMMUG00000021721 ortholog_one2one 1 retrogene
retro_mmul_951,
Oryctolagus cuniculus ENSOCUG00000017003 ortholog_one2one 1 retrogene
retro_ocun_800,
Pongo abelii ENSPPYG00000012360 ortholog_one2one 1 retrogene
retro_pabe_2135,
Pan troglodytes ENSPTRG00000011989 ortholog_one2one 1 retrogene
retro_ptro_1727,
Rattus norvegicus ENSRNOG00000004992 ortholog_one2one 1 retrogene
retro_rnor_110,
Ictidomys tridecemlineatus ENSSTOG00000020693 ortholog_one2one 1 retrogene
retro_itri_1541,
Drosophila melanogaster FBgn0016700 ortholog_one2many 1 retrogene
retro_dmel_36,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2362 88.20 77.56
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2. retro_hsap_3626 74.80 69.94
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Download FASTA sequences of all ENSG00000138069 retrocopies