RetrogeneDB ID: | retro_mmul_951 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:54726734..54727199(-) | ||
Located in intron of: | ENSMMUG00000005613 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1094 | ||
Ensembl ID: | ENSMMUG00000021721 | ||
Aliases: | None | ||
Description: | RAB1A, member RAS oncogene family [Source:RefSeq peptide;Acc:NP_001244201] |
Percent Identity: | 85.16 % |
Parental protein coverage: | 75.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NNENDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR |
N...DYLFKLLLIGDSG.G.SCLLLRFADDTYTESYIST.G.DFKIRTIELDGKTIKLQIW.TA.QERFR | |
Retrocopy | NPKYDYLFKLLLIGDSGAGRSCLLLRFADDTYTESYISTVGGDFKIRTIELDGKTIKLQIWNTAEQERFR |
Parental | TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD |
T..SS.YRGA.GI.VVYDVTDQES.NN.KQ.LQ.ID.Y.SEN.N.LLVGNKCDLTTKKVVDYTTAKEFAD | |
Retrocopy | TVISSCYRGARGILVVYDVTDQESLNNIKQ*LQKIDHYPSENINRLLVGNKCDLTTKKVVDYTTAKEFAD |
Parental | SLGIPFLETSAKNAT |
SLGI.FLETSAKNAT | |
Retrocopy | SLGILFLETSAKNAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 19 .72 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .36 RPM |
SRP007412_cerebellum | 0 .13 RPM | 12 .27 RPM |
SRP007412_heart | 0 .06 RPM | 9 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .24 RPM |
SRP007412_liver | 0 .04 RPM | 8 .59 RPM |
SRP007412_testis | 0 .00 RPM | 17 .34 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000002112 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002205 | 2 retrocopies | |
Homo sapiens | ENSG00000138069 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017586 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021721 | 1 retrocopy |
retro_mmul_951 ,
|
Oryctolagus cuniculus | ENSOCUG00000017003 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012360 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011989 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004992 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020693 | 1 retrocopy | |
Drosophila melanogaster | FBgn0016700 | 1 retrocopy |