Parental gene: | SSBP3, ENSG00000157216 |
| Aliases: | SSBP3, CSDP, SSDP, SSDP1 |
| Description: | single stranded DNA binding protein 3 [Source:HGNC Symbol;Acc:15674] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:54691104..54879152(-) |
>ENSG00000157216
ATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGATGGGCAGGCTCGGGAAAAGTTAGCTTTATACGTCTACGAATA
TTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCGATGGGAAAAAAACATCACGTTGGGAG
AACCGCCTGGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACACTTGT
GAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATAGTGCAGCAGCTGCCCCGAGCCCCGTGCTTGGCAACATTCCCCC
CAACGATGGGATGCCGGGAGGCCCCATCCCGCCAGGTTTCTTTCAGGGTCCTCCGGGGTCACAGCCCTCGCCGCACGCAC
AGCCTCCACCTCACAATCCTAGCAGCATGATGGGACCCCACAGTCAGCCTTTTATGTCACCGCGATACGCAGGCGGCCCC
AGGCCCCCGATCAGAATGGGAAACCAGCCTCCGGGAGGAGTTCCTGGGACACAGCCATTGCTGCCCAATTCTATGGATCC
CACACGACAACAAGGCCACCCCAACATGGGAGGATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGTC
CCGGCCCACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCCTCGGCCCCGCCATGCCCGGGATTAACATGGGC
CCGGGAGCTGGCAGACCCTGGCCCAATCCTAACAGTGCTAACTCAATTCCATACTCCTCCTCATCACCTGGTACCTATGT
GGGACCCCCTGGTGGTGGCGGTCCTCCAGGAACACCCATTATGCCCAGTCCCGCAGATTCAACAAATTCCAGTGACAACA
TCTACACAATGATTAATCCAGTGCCGCCTGGAGGCAGCCGGTCCAACTTCCCGATGGGTCCCGGCTCGGACGGTCCGATG
GGCGGCATGGGTGGCATGGAGCCACACCACATGAATGGATCATTAGGGTCAGGCGACATAGACGGACTTCCAAAAAATTC
TCCTAACAACATAAGTGGCATTAGCAATCCTCCAGGCACCCCTCGAGATGACGGCGAGCTAGGAGGGAACTTCCTCCACT
CCTTTCAGAACGACAATTATTCTCCAAGCATGACGATGAGTGTGTGA
ATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGATGGGCAGGCTCGGGAAAAGTTAGCTTTATACGTCTACGAATA
TTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCGATGGGAAAAAAACATCACGTTGGGAG
AACCGCCTGGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACACTTGT
GAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATAGTGCAGCAGCTGCCCCGAGCCCCGTGCTTGGCAACATTCCCCC
CAACGATGGGATGCCGGGAGGCCCCATCCCGCCAGGTTTCTTTCAGGGTCCTCCGGGGTCACAGCCCTCGCCGCACGCAC
AGCCTCCACCTCACAATCCTAGCAGCATGATGGGACCCCACAGTCAGCCTTTTATGTCACCGCGATACGCAGGCGGCCCC
AGGCCCCCGATCAGAATGGGAAACCAGCCTCCGGGAGGAGTTCCTGGGACACAGCCATTGCTGCCCAATTCTATGGATCC
CACACGACAACAAGGCCACCCCAACATGGGAGGATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGTC
CCGGCCCACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCCTCGGCCCCGCCATGCCCGGGATTAACATGGGC
CCGGGAGCTGGCAGACCCTGGCCCAATCCTAACAGTGCTAACTCAATTCCATACTCCTCCTCATCACCTGGTACCTATGT
GGGACCCCCTGGTGGTGGCGGTCCTCCAGGAACACCCATTATGCCCAGTCCCGCAGATTCAACAAATTCCAGTGACAACA
TCTACACAATGATTAATCCAGTGCCGCCTGGAGGCAGCCGGTCCAACTTCCCGATGGGTCCCGGCTCGGACGGTCCGATG
GGCGGCATGGGTGGCATGGAGCCACACCACATGAATGGATCATTAGGGTCAGGCGACATAGACGGACTTCCAAAAAATTC
TCCTAACAACATAAGTGGCATTAGCAATCCTCCAGGCACCCCTCGAGATGACGGCGAGCTAGGAGGGAACTTCCTCCACT
CCTTTCAGAACGACAATTATTCTCCAAGCATGACGATGAGTGTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 20 .40 RPM |
| bodymap2_lung | 59 .99 RPM |
| bodymap2_breast | 46 .23 RPM |
| bodymap2_adipose | 59 .08 RPM |
| bodymap2_adrenal | 40 .02 RPM |
| bodymap2_skeletal_muscle | 38 .38 RPM |
| bodymap2_thyroid | 34 .97 RPM |
| bodymap2_prostate | 94 .01 RPM |
| bodymap2_colon | 85 .29 RPM |
| bodymap2_testis | 102 .73 RPM |
| bodymap2_brain | 139 .16 RPM |
| bodymap2_heart | 40 .56 RPM |
| bodymap2_white_blood_cells | 78 .44 RPM |
| bodymap2_lymph_node | 52 .79 RPM |
| bodymap2_ovary | 150 .32 RPM |
| bodymap2_kidney | 40 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000005029 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000130511 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000145687 | within_species_paralog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000009291 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000005903 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000000770 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1302 | 88.99 | 87.37 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1384 | 86.59 | 87.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_2155 | 93.33 | 68.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_2319 | 90.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_2539 | 87.76 | 87.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_3721 | 95.65 | 76.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000157216 retrocopies