Parental gene:

SSBP4, ENSG00000130511

Aliases:None
Description:single stranded DNA binding protein 4 [Source:HGNC Symbol;Acc:15676]
Organism:Human (Homo sapiens)
Coordinates:19:18529673..18545372(+)


>ENSG00000130511
ATGTACGCCAAGGGGGGCAAGGGTTCGGCCGTGCCCTCCGACAGCCAGGCCCGCGAGAAGTTGGCGCTGTACGTTTATGA
GTACCTGCTGCACATCGGTGCCCAGAAGTCAGCCCAGACCTTCCTGTCTGAGATCCGATGGGAGAAGAACATCACGCTGG
GGGAGCCCCCTGGGTTCCTGCACTCCTGGTGGTGCGTCTTCTGGGACCTGTACTGCGCGGCGCCTGACAGAAGAGAGGCC
TGCGAGCACTCCGGCGAGGCCAAGGCCTTCCAGGACTATAGTGCTGCAGCCGCCCCCAGCCCCGTTATGGGGAGTATGGC
CCCAGGTGACACAATGGCCGCAGGCTCCATGGCGGCTGGCTTCTTCCAGGGCCCCCCCGGCTCCCAGCCGTCCCCCCACA
ACCCCAACGCCCCCATGATGGGGCCTCACGGTCAGCCCTTCATGTCACCGCGCTTCCCAGGGGGCCCCCGGCCCACCCTG
CGGATGCCGAGTCAGCCTCCCGCAGGCCTCCCTGGCTCCCAGCCCCTCCTCCCTGGCGCCATGGAGCCCTCCCCACGAGC
CCAGGGGCATCCGAGCATGGGCGGCCCAATGCAGAGGGTGACGCCTCCTCGTGGCATGGCCAGCGTGGGGCCCCAGAGCT
ATGGAGGTGGCATGCGACCCCCACCCAACTCCCTCGCCGGCCCAGGCCTGCCTGCCATGAACATGGGCCCAGGAGTTCGT
GGCCCGTGGGCCAGCCCCAGTGGAAACTCGATCCCCTACTCCTCCTCATCCCCCGGCAGCTACACCGGACCCCCAGGAGG
AGGTGGGCCCCCTGGAACACCCATCATGCCTAGCCCTGGAGATTCCACCAACTCCAGCGAAAACATGTACACTATCATGA
ACCCCATCGGGCAGGGCGCCGGCAGGGCTAATTTCCCGCTCGGCCCTGGCCCGGAGGGCCCCATGGCCGCCATGAGCGCG
ATGGAGCCTCACCACGTGAACGGATCCCTGGGCTCGGGCGACATGGACGGGTTGCCGAAGAGTTCCCCCGGCGCCGTGGC
CGGCCTGAGCAACGCCCCGGGCACCCCGCGGGACGACGGCGAGATGGCGGCCGCCGGGACCTTCCTGCACCCGTTCCCGA
GCGAAAGCTACTCGCCAGGGATGACCATGAGCGTGTGA

Library Parental gene expression (RPM)
bodymap2_liver 3 .44 RPM
bodymap2_lung 19 .15 RPM
bodymap2_breast 9 .49 RPM
bodymap2_adipose 11 .21 RPM
bodymap2_adrenal 19 .94 RPM
bodymap2_skeletal_muscle 7 .62 RPM
bodymap2_thyroid 8 .70 RPM
bodymap2_prostate 12 .73 RPM
bodymap2_colon 10 .25 RPM
bodymap2_testis 13 .48 RPM
bodymap2_brain 5 .23 RPM
bodymap2_heart 5 .26 RPM
bodymap2_white_blood_cells 17 .68 RPM
bodymap2_lymph_node 24 .60 RPM
bodymap2_ovary 24 .67 RPM
bodymap2_kidney 8 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000145687 within_species_paralog 1 retrogene
retro_hsap_3622,
Homo sapiens ENSG00000157216 within_species_paralog 6 retrogenes
retro_hsap_1302, retro_hsap_1384, retro_hsap_2155, retro_hsap_2319, retro_hsap_2539, retro_hsap_3721,
Gorilla gorilla ENSGGOG00000016931 ortholog_one2one 1 retrogene
retro_ggor_1759,
Pan troglodytes ENSPTRG00000010709 ortholog_one2one 2 retrogenes
retro_ptro_1250, retro_ptro_1640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1911 92.20 92.99
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Download FASTA sequences of all ENSG00000130511 retrocopies