Parental gene: | TPM4, ENSG00000167460 |
| Aliases: | TPM4, HEL-S-108 |
| Description: | tropomyosin 4 [Source:HGNC Symbol;Acc:12013] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 19:16177830..16213813(+) |
>ENSG00000167460
ATGGAGGCCATCAAGAAGAAAATGCAGATGCTGAAGTTGGACAAGGAGAATGCCATCGACCGCGCGGAGCAGGCGGAGGC
GGATAAGAAAGCCGCTGAGGACAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAACTAAAAGGGACAG
AGGACGAGCTGGATAAATATTCCGAGGACCTGAAGGACGCGCAGGAGAAGCTGGAGCTCACGGAGAAGAAGGCCTCCGAC
GCTGAAGGTGATGTGGCCGCCCTCAACCGACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGC
CACGGCCCTGCAGAAGCTGGAGGAGGCAGAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGG
CCATGAAGGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGC
AAATACGAGGAGGTAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGA
ACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGT
ATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAA
TTTGCAGAGAGAACGGTTGCAAAACTGGAAAAGACAATTGATGACCTGGAAGAGAAACTTGCCCAGGCCAAAGAAGAGAA
CGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAACTTAACTGTATATAA
ATGGAGGCCATCAAGAAGAAAATGCAGATGCTGAAGTTGGACAAGGAGAATGCCATCGACCGCGCGGAGCAGGCGGAGGC
GGATAAGAAAGCCGCTGAGGACAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAACTAAAAGGGACAG
AGGACGAGCTGGATAAATATTCCGAGGACCTGAAGGACGCGCAGGAGAAGCTGGAGCTCACGGAGAAGAAGGCCTCCGAC
GCTGAAGGTGATGTGGCCGCCCTCAACCGACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGC
CACGGCCCTGCAGAAGCTGGAGGAGGCAGAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGG
CCATGAAGGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGC
AAATACGAGGAGGTAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGA
ACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGT
ATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAA
TTTGCAGAGAGAACGGTTGCAAAACTGGAAAAGACAATTGATGACCTGGAAGAGAAACTTGCCCAGGCCAAAGAAGAGAA
CGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAACTTAACTGTATATAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 50 .80 RPM |
| bodymap2_lung | 1591 .70 RPM |
| bodymap2_breast | 317 .96 RPM |
| bodymap2_adipose | 717 .16 RPM |
| bodymap2_adrenal | 529 .36 RPM |
| bodymap2_skeletal_muscle | 56 .67 RPM |
| bodymap2_thyroid | 210 .46 RPM |
| bodymap2_prostate | 516 .99 RPM |
| bodymap2_colon | 542 .29 RPM |
| bodymap2_testis | 440 .37 RPM |
| bodymap2_brain | 154 .12 RPM |
| bodymap2_heart | 107 .68 RPM |
| bodymap2_white_blood_cells | 316 .50 RPM |
| bodymap2_lymph_node | 419 .69 RPM |
| bodymap2_ovary | 886 .43 RPM |
| bodymap2_kidney | 295 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000014135 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000143549 | within_species_paralog | 9 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014510 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000009884 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2623 | 95.02 | 89.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_3969 | 93.36 | 89.11 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000167460 retrocopies