RetrogeneDB ID: | retro_ggor_2801 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:44322077..44322794(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000028454 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM4 | ||
Ensembl ID: | ENSGGOG00000014510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.38 % |
Parental protein coverage: | 96.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERL |
MAGLNSLE.VKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNR.IQLVEEEL.RAQERL | |
Retrocopy | MAGLNSLEVVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRCIQLVEEELGRAQERL |
Parental | ATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGEL |
A.ALQKLEEAEKAADESERGMK.IENRAMKDEEKMEIQE.QLKEAKHIAEEADRKYEEVARKLVILEGEL | |
Retrocopy | AMALQKLEEAEKAADESERGMKLIENRAMKDEEKMEIQELQLKEAKHIAEEADRKYEEVARKLVILEGEL |
Parental | ERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTV |
ERAE.RAEVSEL.CGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSD.LKEAETRAEFAERTV | |
Retrocopy | ERAEVRAEVSELRCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDRLKEAETRAEFAERTV |
Parental | AKLEKTIDDLEDELYAQKLKYKAISEELD |
AKLEKTIDDLE..L...K.........LD | |
Retrocopy | AKLEKTIDDLEEKLAQTKEENVGLHQTLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .91 RPM | 39 .56 RPM |
SRP007412_cerebellum | 1 .02 RPM | 70 .96 RPM |
SRP007412_heart | 0 .31 RPM | 22 .20 RPM |
SRP007412_kidney | 0 .49 RPM | 21 .75 RPM |
SRP007412_liver | 0 .76 RPM | 20 .60 RPM |
SRP007412_testis | 17 .82 RPM | 113 .34 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004553 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015796 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Homo sapiens | ENSG00000167460 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000012668 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000014510 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000014882 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005413 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009884 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010637 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009755 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012927 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010642 | 9 retrocopies | |
Tursiops truncatus | ENSTTRG00000014542 | 2 retrocopies |