Parental gene:

PSMD12, ENSG00000197170

Aliases:None
Description:proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 [Source:HGNC Symbol;Acc:9557]
Organism:Human (Homo sapiens)
Coordinates:17:65334031..65362743(-)


>ENSG00000197170
ATGGCGGACGGCGGCTCGGAGCGGGCTGACGGGCGCATCGTCAAGATGGAGGTGGACTACAGCGCCACGGTGGATCAGCG
CCTACCCGAGTGTGCGAAGCTAGCCAAGGAAGGAAGACTTCAAGAAGTCATTGAAACCCTTCTCTCTCTGGAAAAGCAGA
CTCGTACTGCTTCCGATATGGTATCGACATCCCGTATCTTAGTTGCAGTAGTGAAGATGTGCTATGAGGCTAAAGAATGG
GATTTACTTAATGAAAATATTATGCTTTTGTCCAAAAGGCGGAGTCAGTTAAAACAAGCTGTTGCCAAAATGGTTCAACA
GTGCTGTACTTATGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACCGAAG
GCAAGATTTATGTTGAAATTGAGCGTGCGCGACTGACTAAAACATTAGCAACTATAAAAGAACAAAATGGTGATGTGAAA
GAGGCAGCCTCCATTTTACAGGAGTTACAGGTGGAAACCTACGGGTCAATGGAAAAGAAAGAGCGAGTGGAATTTATTTT
GGAGCAAATGAGGCTCTGCCTAGCTGTGAAGGATTACATTCGAACACAAATCATCAGCAAGAAAATTAACACCAAATTTT
TCCAGGAAGAAAATACAGAGAAATTAAAGTTGAAGTACTATAATTTAATGATTCAGCTGGATCAACATGAGGGATCCTAT
TTGTCTATTTGTAAGCACTACAGAGCAATATATGATACTCCCTGTATACAGGCAGAAAGTGAAAAATGGCAGCAGGCTCT
GAAGAGTGTTGTACTCTATGTTATCCTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTTCACCGAATAAGTGGTGACA
AGAAGTTAGAAGAAATTCCCAAATACAAGGATCTTTTAAAGCTTTTTACCACAATGGAGTTGATGCGTTGGTCCACACTT
GTTGAGGACTATGGAATGGAATTAAGAAAAGGTTCCCTTGAGAGTCCTGCAACGGATGTTTTTGGTTCTACAGAGGAAGG
TGAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCCAAGTATTATACTCGGATAA
CAATGAAAAGGATGGCACAGCTTCTGGATCTATCTGTTGATGAGTCCGAAGCCTTTCTCTCAAATCTAGTAGTTAACAAG
ACCATCTTTGCTAAAGTAGACAGATTAGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGA
CTGGTCTCAGAAACTGAACTCATTAATGTCTCTGGTTAACAAAACTACGCATCTCATAGCCAAAGAGGAGATGATACATA
ATCTACAATAA

Library Parental gene expression (RPM)
bodymap2_liver 79 .55 RPM
bodymap2_lung 61 .32 RPM
bodymap2_breast 84 .01 RPM
bodymap2_adipose 65 .84 RPM
bodymap2_adrenal 78 .11 RPM
bodymap2_skeletal_muscle 94 .38 RPM
bodymap2_thyroid 101 .48 RPM
bodymap2_prostate 73 .56 RPM
bodymap2_colon 74 .69 RPM
bodymap2_testis 109 .73 RPM
bodymap2_brain 88 .44 RPM
bodymap2_heart 56 .93 RPM
bodymap2_white_blood_cells 45 .68 RPM
bodymap2_lymph_node 44 .93 RPM
bodymap2_ovary 69 .86 RPM
bodymap2_kidney 79 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008691 ortholog_one2one 2 retrogenes
retro_cjac_1400, retro_cjac_2793,
Gorilla gorilla ENSGGOG00000014761 ortholog_one2one 1 retrogene
retro_ggor_1947,
Loxodonta africana ENSLAFG00000010876 ortholog_one2one 1 retrogene
retro_lafr_467,
Nomascus leucogenys ENSNLEG00000001265 ortholog_one2one 1 retrogene
retro_nleu_1541,
Pongo abelii ENSPPYG00000008565 ortholog_one2one 1 retrogene
retro_pabe_2223,
Pan troglodytes ENSPTRG00000022722 ortholog_one2one 1 retrogene
retro_ptro_1898,
Tupaia belangeri ENSTBEG00000014760 ortholog_one2one 1 retrogene
retro_tbel_443,
Tarsius syrichta ENSTSYG00000013154 ortholog_one2one 1 retrogene
retro_tsyr_1670,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2801 89.93 100.00
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Download FASTA sequences of all ENSG00000197170 retrocopies