Parental gene:

PSMD12, ENSPPYG00000008565

Aliases:None
Description:26S proteasome non-ATPase regulatory subunit 12 [Source:RefSeq peptide;Acc:NP_001125501]
Organism:Orangutan (Pongo abelii)
Coordinates:17:57020883..57051066(-)


>ENSPPYG00000008565
ATGGCGGACGGCGGCTCGGAGCGGGCTGACGGGCGCATCGTCAAGATGGAGGTGGACTACAGCGCCACGGTGGATCAGCG
CCTACCCGAGTGTGCGAAGCTAGCCAAGGAAGGAAGACTTCAAGAAGTCATTGAAACCCTTCTCTCTCTGGAAAAGCAGA
CTCGTACTGCTTCCGATATGGTATCTACATCCCGTATCTTAGTTGCAGTAGTGAAGATGTGCTATGAGGCTAAAGAATGG
GATTTACTTAATGAAAATATTATGCTTTTGTCCAAAAGGCGGAGTCAGTTAAAACAAGCTGTTGCCAAAATGGTTCAACA
GTGCTGTACTTATGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACTGAAG
GCAAGATTTATGTTGAAATTGAGCGTGCGCGACTGACTAAAACATTAGCAACTATAAAAGAACAAAATGGTGATGTGAAA
GAGGCAGCCTCCATTTTACAGGAGTTACAGGTGGAAACCTACGGGTCAATGGAAAAGAAGGAGCGAGTGGAATTTATTTT
GGAGCAAATGAGGCTCTGCCTAGCTGTGAAGGATTACATTCGAACACAAATCATCAGCAAGAAAATTAACACCAAATTTT
TCCAGGAAGAAAATACAGAGAAATTAAAGTTGAAGTACTATAATTTAATGATTCAGCTGGATCAACATGAGGGATCCTAT
TTGTCTATTTGTAAGCACTACAGAGCAATATATGATACTCCCTGTATACAGGCAGAAAGTGAAAAATGGCAGCAGGCTCT
GAAGAGTGTTGTACTCTATGTTATCCTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTTCACCGAATAAGTGGTGACA
AGAAGTTAGAAGAAATTCCCAAATACAAGGATCTTTTAAAGCTTTTTACCACAATGGAGTTGATGCGTTGGTCCACACTT
GTTGAGGACTATGGAATGGAATTAAGAAAAGGTTCCCTTGAGAGTCCTGCAACGGATGTTTTTGGTTCTACAGAGGAAGG
TGAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCCAAGTATTATACTCGGATAA
CAATGAAAAGGATGGCACAGCTTCTGGATCTATCTGTTGATGAGTCCGAAGCCTTTCTCTCAAATCTAGTAGTTAACAAG
ACCATCTTTGCTAAAGTAGACAGATTAGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGA
CTGGTCTCAGAAACTGAACTCATTAATGTCTCTGGTTAACAAAACTACACATCTCATAGCCAAAGAGGAGATGATACATA
ATCTACAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 30 .35 RPM
SRP007412_cerebellum 40 .37 RPM
SRP007412_heart 15 .59 RPM
SRP007412_kidney 19 .26 RPM
SRP007412_liver 24 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008691 ortholog_one2one 2 retrogenes
retro_cjac_1400, retro_cjac_2793,
Homo sapiens ENSG00000197170 ortholog_one2one 1 retrogene
retro_hsap_2801,
Gorilla gorilla ENSGGOG00000014761 ortholog_one2one 1 retrogene
retro_ggor_1947,
Loxodonta africana ENSLAFG00000010876 ortholog_one2one 1 retrogene
retro_lafr_467,
Nomascus leucogenys ENSNLEG00000001265 ortholog_one2one 1 retrogene
retro_nleu_1541,
Pan troglodytes ENSPTRG00000022722 ortholog_one2one 1 retrogene
retro_ptro_1898,
Tupaia belangeri ENSTBEG00000014760 ortholog_one2one 1 retrogene
retro_tbel_443,
Tarsius syrichta ENSTSYG00000013154 ortholog_one2one 1 retrogene
retro_tsyr_1670,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2223 87.28 100.00
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Download FASTA sequences of all ENSPPYG00000008565 retrocopies