RetrogeneDB ID: | retro_ggor_1947 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:74623913..74625280(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD12 | ||
Ensembl ID: | ENSGGOG00000014761 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAV |
MADG..E.AD.RI.KMEVDY.ATVDQ.LPEC.KLAKEGRLQEV.ETLLSLEKQTRTASDM.STS.ILVAV | |
Retrocopy | MADGHLEWADRRIFKMEVDYNATVDQCLPECEKLAKEGRLQEVMETLLSLEKQTRTASDMGSTSQILVAV |
Parental | VKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEI |
VKMCYEAK.WDLLNENI.LLSKRRSQL.QAVAKMVQ..C.YVEEITDLPIKL.L.DTL.MVTEGKIYVEI | |
Retrocopy | VKMCYEAK*WDLLNENITLLSKRRSQLIQAVAKMVQ*YCIYVEEITDLPIKLQLTDTL*MVTEGKIYVEI |
Parental | ERARLTKTLATIKEQNGDVKEAASILQ-ELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKI |
E.A.LTKTLATIKEQNGDVKEAAS....ELQVETYGSM.KKE.VEFILEQMRLCLAVKDYIRT.IISKKI | |
Retrocopy | ECA*LTKTLATIKEQNGDVKEAASVYR<ELQVETYGSMQKKEQVEFILEQMRLCLAVKDYIRT*IISKKI |
Parental | NTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPF |
NTKFFQEENT.KLKLKY.NLM.QLD.HEGSYL.ICKHYRAIY.TPCIQAESEKWQQA.KSVV.YV.LAPF | |
Retrocopy | NTKFFQEENTAKLKLKYDNLMTQLDEHEGSYLFICKHYRAIYNTPCIQAESEKWQQAMKSVVPYVTLAPF |
Parental | DNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEK |
DNEQSDLVHRISGDKK.EEIPKYKDLLKLFTTMELMRWSTLVEDY.MEL.KGS..SPATD.FGSTEEGEK | |
Retrocopy | DNEQSDLVHRISGDKKSEEIPKYKDLLKLFTTMELMRWSTLVEDYEMELSKGSVGSPATDAFGSTEEGEK |
Parental | RWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPK |
RWKDL.NRVVEHNIRIMAKYYTR.TMKRM.QLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGI.N.QRPK | |
Retrocopy | RWKDLSNRVVEHNIRIMAKYYTRMTMKRMVQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGINNVQRPK |
Parental | DPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ |
DPNNL.NDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ | |
Retrocopy | DPNNL*NDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 24 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .59 RPM |
SRP007412_heart | 0 .00 RPM | 3 .56 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .42 RPM |
SRP007412_liver | 0 .00 RPM | 13 .11 RPM |
SRP007412_testis | 0 .00 RPM | 48 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2801 |
Pan troglodytes | retro_ptro_1898 |
Callithrix jacchus | retro_cjac_1400 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000008691 | 2 retrocopies | |
Homo sapiens | ENSG00000197170 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014761 | 1 retrocopy |
retro_ggor_1947 ,
|
Loxodonta africana | ENSLAFG00000010876 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001265 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008565 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022722 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014760 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013154 | 1 retrocopy |