Parental gene:

HDAC3, ENSMMUG00000012588

Aliases:None
Description:histone deacetylase 3 [Source:RefSeq peptide;Acc:NP_001253426]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:6:138017487..138034948(-)


>ENSMMUG00000012588
ATGGCCAAGACCGTGGCCTATTTCTACGACCCCGACGTGGGCAACTTCCACTACGGAGCTGGACACCCTATGAAGCCCCA
TCGCTTGGCATTGACCCATAGCCTGGTCCTGCATTACGGTCTCTATAAGAAGATGATCGTCTTCAAGCCATACCAGGCCT
CCCAGCATGACATGTGCCGCTTCCACTCCGAGGACTACATTGACTTCCTGCAGAGAGTCAGCCCCACCAATATGCAAGGC
TTCACCAAGAGTCTTAATGCCTTCAACGTAGGCGATGACTGCCCAGTGTTTCCCGGGCTCTTTGAGTTCTGCTCGCGTTA
CACAGGCGCATCTCTGCAAGGAGCAACCCAGCTGAACAACAAGATCTGTGATATTGCCATTAACTGGGCTGGTGGTCTGC
ACCATGCCAAGAAGTTTGAGGCCTCTGGCTTCTGCTATGTCAACGACATTGTGATTGGCATCCTGGAGCTGCTCAAGTAC
CACCCTCGGGTGCTTTACATTGATATTGACATCCACCATGGTGACGGGGTTCAGGAAGCTTTCTACCTCACTGACCGGGT
CATGACGGTGTCCTTCCACAAATACGGAAATTACTTCTTCCCTGGCACAGGTGACATGTATGAAGTCGGGGCAGAGAGTG
GCCGCTACTACTGTCTGAATGTGCCCCTGCGGGATGGCATTGATGACCAGAGTTACAAGCACCTTTTCCAGCCGGTTATC
AACCAGGTAGTGGACTTCTACCAACCCACGTGCATTGTGCTCCAGTGTGGAGCTGACTCTCTGGGCTGTGATCGATTGGG
CTGCTTTAACCTCAGCATCCGAGGGCATGGGGAATGCGTCGAATATGTCAAGAGCTTCAATATCCCTCTACTGGTGCTGG
GTGGTGGTGGTTATACTGTCCGAAATGTTGCCCGTTGCTGGACATATGAGACATCGCTGCTGGTAGAAGAGGCCATTAGT
GAGGAGCTTCCCTATAGTGAATACTTCGAGTACTTTGCCCCAGACTTCACACTTCATCCAGATGTCAGCACTCGCATCGA
GAATCAGAACTCACGCCAGTATCTGGACCAGATCCGCCAGACAATCTTTGAAAACCTGAAGATGCTGAACCATGCACCTA
GTGTCCAGATTCATGACGTGCCTGCAGACCTCCTGACCTATGACAGGACTGATGAGGCTGATGCAGAGGAGAGGGGTCCT
GAGGAGAACTATAGCAGGCCAGAGGCACCCAATGAGTTCTATGATGGAGACCATGACAATGACAAGGAAAGTGATGTGGA
GATTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 23 .24 RPM
SRP007412_brain 24 .65 RPM
SRP007412_cerebellum 30 .87 RPM
SRP007412_heart 18 .02 RPM
SRP007412_kidney 40 .14 RPM
SRP007412_liver 12 .75 RPM
SRP007412_testis 63 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Myotis lucifugus ENSMLUG00000008662 ortholog_one2many 1 retrogene
retro_mluc_642,
Macaca mulatta ENSMMUG00000009948 within_species_paralog 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Procavia capensis ENSPCAG00000010817 ortholog_one2many 1 retrogene
retro_pcap_298,
Ictidomys tridecemlineatus ENSSTOG00000016240 ortholog_one2many 1 retrogene
retro_itri_1661,
Tupaia belangeri ENSTBEG00000007520 ortholog_one2many 1 retrogene
retro_tbel_1811,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_49 96.86 60.11
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Download FASTA sequences of all ENSMMUG00000012588 retrocopies